{"id":"https://openalex.org/W4405220491","doi":"https://doi.org/10.1093/bioinformatics/btae722","title":"m5c-iEnsem: 5-methylcytosine sites identification through ensemble models","display_name":"m5c-iEnsem: 5-methylcytosine sites identification through ensemble models","publication_year":2024,"publication_date":"2024-12-09","ids":{"openalex":"https://openalex.org/W4405220491","doi":"https://doi.org/10.1093/bioinformatics/btae722","pmid":"https://pubmed.ncbi.nlm.nih.gov/39657957"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae722","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae722/61006800/btae722.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae722/61006800/btae722.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030978807","display_name":"Anas Bilal","orcid":"https://orcid.org/0000-0002-7760-3374"},"institutions":[{"id":"https://openalex.org/I152033890","display_name":"Hainan Normal University","ror":"https://ror.org/031dhcv14","country_code":"CN","type":"education","lineage":["https://openalex.org/I152033890"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Anas Bilal","raw_affiliation_strings":["College of Information Science and Technology, Hainan Normal University , Haikou 571158,","Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University , Haikou 571158,","College of Information Science and Technology, Hainan Normal University, Haikou, 571158, China","Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University, Haikou, 571158, China"],"raw_orcid":"https://orcid.org/0000-0002-7760-3374","affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, Hainan Normal University , Haikou 571158,","institution_ids":["https://openalex.org/I152033890"]},{"raw_affiliation_string":"Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University , Haikou 571158,","institution_ids":["https://openalex.org/I152033890"]},{"raw_affiliation_string":"College of Information Science and Technology, Hainan Normal University, Haikou, 571158, China","institution_ids":["https://openalex.org/I152033890"]},{"raw_affiliation_string":"Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University, Haikou, 571158, China","institution_ids":["https://openalex.org/I152033890"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040908419","display_name":"Fawaz Khaled Alarfaj","orcid":"https://orcid.org/0000-0002-6598-6240"},"institutions":[{"id":"https://openalex.org/I4626487","display_name":"King Faisal University","ror":"https://ror.org/00dn43547","country_code":"SA","type":"education","lineage":["https://openalex.org/I4626487"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Fawaz Khaled Alarfaj","raw_affiliation_strings":["Department of Management Information Systems (MIS), School of Business, King Faisal University (KFU) , Al-Ahsa 31982,","King Faisal University (KFU) Department of Management Information Systems (MIS), School of Business, , Al-Ahsa, 31982, Saudi\u00a0Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Management Information Systems (MIS), School of Business, King Faisal University (KFU) , Al-Ahsa 31982,","institution_ids":["https://openalex.org/I4626487"]},{"raw_affiliation_string":"King Faisal University (KFU) Department of Management Information Systems (MIS), School of Business, , Al-Ahsa, 31982, Saudi\u00a0Arabia","institution_ids":["https://openalex.org/I4626487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045150195","display_name":"Rafaqat Alam Khan","orcid":"https://orcid.org/0000-0003-2238-7384"},"institutions":[{"id":"https://openalex.org/I4210105419","display_name":"Lahore Garrison University","ror":"https://ror.org/01j4ba358","country_code":"PK","type":"education","lineage":["https://openalex.org/I4210105419"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Rafaqat Alam Khan","raw_affiliation_strings":["Department of Software Engineering, Lahore Garrison University , Lahore 54000,","Department of Software Engineering, Lahore Garrison University, Lahore, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Lahore Garrison University , Lahore 54000,","institution_ids":["https://openalex.org/I4210105419"]},{"raw_affiliation_string":"Department of Software Engineering, Lahore Garrison University, Lahore, Pakistan","institution_ids":["https://openalex.org/I4210105419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013073372","display_name":"Muhammad Taseer Suleman","orcid":"https://orcid.org/0000-0001-8563-6574"},"institutions":[{"id":"https://openalex.org/I142204992","display_name":"University of Lahore","ror":"https://ror.org/051jrjw38","country_code":"PK","type":"education","lineage":["https://openalex.org/I142204992"]},{"id":"https://openalex.org/I59225215","display_name":"Bahria University","ror":"https://ror.org/02v8d7770","country_code":"PK","type":"education","lineage":["https://openalex.org/I59225215"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Muhammad Taseer Suleman","raw_affiliation_strings":["Department of Computer Science, Bahria University Lahore Campus , Lahore 54000,","Department of Computer Science, Bahria University Lahore Campus, Lahore, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Bahria University Lahore Campus , Lahore 54000,","institution_ids":["https://openalex.org/I142204992","https://openalex.org/I59225215"]},{"raw_affiliation_string":"Department of Computer Science, Bahria University Lahore Campus, Lahore, Pakistan","institution_ids":["https://openalex.org/I59225215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013151803","display_name":"Haixia Long","orcid":"https://orcid.org/0000-0003-2202-3820"},"institutions":[{"id":"https://openalex.org/I152033890","display_name":"Hainan Normal University","ror":"https://ror.org/031dhcv14","country_code":"CN","type":"education","lineage":["https://openalex.org/I152033890"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haixia Long","raw_affiliation_strings":["College of Information Science and Technology, Hainan Normal University , Haikou 571158,","Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University , Haikou 571158,","College of Information Science and Technology, Hainan Normal University, Haikou, 571158, China","Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University, Haikou, 571158, China"],"raw_orcid":"https://orcid.org/0000-0003-2202-3820","affiliations":[{"raw_affiliation_string":"College of Information Science and Technology, Hainan Normal University , Haikou 571158,","institution_ids":["https://openalex.org/I152033890"]},{"raw_affiliation_string":"Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University , Haikou 571158,","institution_ids":["https://openalex.org/I152033890"]},{"raw_affiliation_string":"College of Information Science and Technology, Hainan Normal University, Haikou, 571158, China","institution_ids":["https://openalex.org/I152033890"]},{"raw_affiliation_string":"Key Laboratory of Data Science and Smart Education, Ministry of Education, Hainan Normal University, Haikou, 571158, China","institution_ids":["https://openalex.org/I152033890"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013151803"],"corresponding_institution_ids":["https://openalex.org/I152033890"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.5177,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.90410324,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"41","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.01269999984651804,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/5-methylcytosine","display_name":"5-Methylcytosine","score":0.7168034315109253},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6547196507453918},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5214283466339111},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32372429966926575},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.31263309717178345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1799156367778778},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11934229731559753},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.08857330679893494}],"concepts":[{"id":"https://openalex.org/C2775926025","wikidata":"https://www.wikidata.org/wiki/Q238563","display_name":"5-Methylcytosine","level":5,"score":0.7168034315109253},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6547196507453918},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5214283466339111},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32372429966926575},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.31263309717178345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1799156367778778},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11934229731559753},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.08857330679893494},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae722","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae722/61006800/btae722.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39657957","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39657957","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:10727288","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11911556","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11911556/pdf/btae722.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae722","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae722/61006800/btae722.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4169346507","display_name":null,"funder_award_id":"823RC488","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G685265085","display_name":null,"funder_award_id":"62262019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405220491.pdf","grobid_xml":"https://content.openalex.org/works/W4405220491.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1967311984","https://openalex.org/W1970097244","https://openalex.org/W2003294969","https://openalex.org/W2075839436","https://openalex.org/W2118881469","https://openalex.org/W2150673739","https://openalex.org/W2465302180","https://openalex.org/W2513256266","https://openalex.org/W2901890703","https://openalex.org/W2915008530","https://openalex.org/W2974377739","https://openalex.org/W2979937512","https://openalex.org/W2991059578","https://openalex.org/W3092000154","https://openalex.org/W3095636085","https://openalex.org/W3123218478","https://openalex.org/W3203684982","https://openalex.org/W3209211977","https://openalex.org/W3214729651","https://openalex.org/W4210459809","https://openalex.org/W4221097529","https://openalex.org/W4225391701","https://openalex.org/W4251268433","https://openalex.org/W4283169605","https://openalex.org/W4285009964","https://openalex.org/W4285807029","https://openalex.org/W4294904638","https://openalex.org/W4307358012","https://openalex.org/W4310778644","https://openalex.org/W4311055719","https://openalex.org/W4317915304","https://openalex.org/W4319056893","https://openalex.org/W4361858341","https://openalex.org/W4378907803","https://openalex.org/W6642734402","https://openalex.org/W6681453827","https://openalex.org/W6803236001","https://openalex.org/W6851151809"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"MOTIVATION:":[0],"5-Methylcytosine":[1],"(m5c),":[2],"a":[3,10,21,60,140],"modified":[4],"cytosine":[5],"base,":[6],"arises":[7],"from":[8],"adding":[9],"methyl":[11],"group":[12],"at":[13,144],"the":[14,50,109,112,131],"5th":[15],"carbon":[16],"position.":[17],"This":[18,70],"modification":[19,26],"is":[20],"prevalent":[22],"form":[23],"of":[24,32,45,53],"post-transcriptional":[25],"(PTM)":[27],"found":[28],"in":[29],"various":[30],"types":[31],"RNA.":[33],"Traditional":[34],"laboratory":[35],"techniques":[36],"often":[37],"fail":[38],"to":[39,66,120],"provide":[40],"rapid":[41],"and":[42,63,92,104],"accurate":[43],"identification":[44],"m5c":[46,67,122],"sites.":[47],"However,":[48],"with":[49],"growing":[51],"accessibility":[52],"sequence":[54],"data,":[55],"expanding":[56],"computational":[57],"models":[58,96,110],"offers":[59],"more":[61],"efficient":[62],"reliable":[64],"approach":[65],"site":[68],"detection.":[69],"research":[71,132],"focused":[72],"on":[73],"creating":[74],"advanced":[75],"in-silico":[76],"methods":[77],"using":[78],"ensemble":[79,88],"learning":[80],"techniques.":[81,94],"The":[82],"encoded":[83],"data":[84],"was":[85],"processed":[86],"through":[87,101],"models,":[89],"including":[90],"bagging":[91],"boosting":[93],"These":[95],"were":[97],"then":[98],"rigorously":[99],"evaluated":[100],"independent":[102],"testing":[103],"10-fold":[105],"cross-validation.":[106],"RESULTS:":[107],"Among":[108],"tested,":[111],"Bagging":[113],"ensemble-based":[114],"predictor,":[115],"m5C-iEnsem,":[116],"demonstrated":[117],"superior":[118],"performance":[119],"existing":[121],"prediction":[123],"tools.":[124],"AVAILABILITY":[125],"AND":[126],"IMPLEMENTATION:":[127],"To":[128],"further":[129],"support":[130],"community,":[133],"m5c-iEnsem":[134],"has":[135],"been":[136],"made":[137],"available":[138],"via":[139],"user-friendly":[141],"web":[142],"server":[143],"https://m5c-iensem.streamlit.app/.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":12}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
