{"id":"https://openalex.org/W4404945112","doi":"https://doi.org/10.1093/bioinformatics/btae721","title":"spread.gl: visualizing pathogen dispersal in a high-performance browser application","display_name":"spread.gl: visualizing pathogen dispersal in a high-performance browser application","publication_year":2024,"publication_date":"2024-11-27","ids":{"openalex":"https://openalex.org/W4404945112","doi":"https://doi.org/10.1093/bioinformatics/btae721","pmid":"https://pubmed.ncbi.nlm.nih.gov/39626311"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae721","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae721","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052539688","display_name":"Yimin Li","orcid":"https://orcid.org/0009-0007-9939-8192"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Yimin Li","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,"],"raw_orcid":"https://orcid.org/0009-0007-9939-8192","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]},{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047600501","display_name":"Nena Bollen","orcid":"https://orcid.org/0000-0002-0532-0658"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Nena Bollen","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-0532-0658","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038540723","display_name":"Samuel L. Hong","orcid":"https://orcid.org/0000-0001-6354-4943"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Samuel L Hong","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0001-6354-4943","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082053260","display_name":"Marius Brusselmans","orcid":"https://orcid.org/0009-0000-2134-1515"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Marius Brusselmans","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0009-0000-2134-1515","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009078874","display_name":"Fabiana G\u00e1mbaro","orcid":"https://orcid.org/0000-0001-7760-2112"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Fabiana Gambaro","raw_affiliation_strings":["Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,"],"raw_orcid":"https://orcid.org/0000-0001-7760-2112","affiliations":[{"raw_affiliation_string":"Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015646632","display_name":"Joon Klaps","orcid":"https://orcid.org/0000-0002-2507-0430"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Joon Klaps","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-2507-0430","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039905606","display_name":"Marc A. Suchard","orcid":"https://orcid.org/0000-0001-9818-479X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc A Suchard","raw_affiliation_strings":["Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles , Los Angeles, CA 90095,","Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles , Los Angeles, CA 90095,","Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles , Los Angeles, CA 90095,","Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA United States","Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA United States","Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA United States"],"raw_orcid":"https://orcid.org/0000-0001-9818-479X","affiliations":[{"raw_affiliation_string":"Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles , Los Angeles, CA 90095,","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles , Los Angeles, CA 90095,","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles , Los Angeles, CA 90095,","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083534383","display_name":"Andrew Rambaut","orcid":"https://orcid.org/0000-0003-4337-3707"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Rambaut","raw_affiliation_strings":["Institute of Ecology and Evolution, University of Edinburgh , Edinburgh, EH9 3FL,","Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-4337-3707","affiliations":[{"raw_affiliation_string":"Institute of Ecology and Evolution, University of Edinburgh , Edinburgh, EH9 3FL,","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039280845","display_name":"Philippe Lemey","orcid":"https://orcid.org/0000-0003-2826-5353"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Philippe Lemey","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-2826-5353","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066369383","display_name":"Simon Dellicour","orcid":"https://orcid.org/0000-0001-9558-1052"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Simon Dellicour","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0001-9558-1052","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Spatial Epidemiology Lab (SpELL), Universit\u00e9 Libre de Bruxelles , Brussels 1050,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Universit\u00e9 Libre de Bruxelles Spatial Epidemiology Lab (SpELL), , Brussels,","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056792309","display_name":"Guy Baele","orcid":"https://orcid.org/0000-0002-1915-7732"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Guy Baele","raw_affiliation_strings":["Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-1915-7732","affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven , Leuven 3000,","institution_ids":["https://openalex.org/I24156275"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052539688"],"corresponding_institution_ids":["https://openalex.org/I132053463","https://openalex.org/I24156275","https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.2614,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.92923169,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.2863999903202057,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.2863999903202057,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.2037000060081482,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.08940000087022781,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-dispersal","display_name":"Biological dispersal","score":0.821233868598938},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6215242743492126},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6083348393440247},{"id":"https://openalex.org/keywords/phylogeography","display_name":"Phylogeography","score":0.567476212978363},{"id":"https://openalex.org/keywords/animation","display_name":"Animation","score":0.5280017852783203},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4639190435409546},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.42985284328460693},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41324543952941895},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30095240473747253},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.3002931475639343},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2794688940048218},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15222325921058655},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.13618499040603638},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.09144803881645203}],"concepts":[{"id":"https://openalex.org/C47559259","wikidata":"https://www.wikidata.org/wiki/Q778143","display_name":"Biological dispersal","level":3,"score":0.821233868598938},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6215242743492126},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6083348393440247},{"id":"https://openalex.org/C94043034","wikidata":"https://www.wikidata.org/wiki/Q377756","display_name":"Phylogeography","level":4,"score":0.567476212978363},{"id":"https://openalex.org/C502989409","wikidata":"https://www.wikidata.org/wiki/Q11425","display_name":"Animation","level":2,"score":0.5280017852783203},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4639190435409546},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.42985284328460693},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41324543952941895},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30095240473747253},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.3002931475639343},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2794688940048218},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15222325921058655},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.13618499040603638},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.09144803881645203},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btae721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae721","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39626311","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39626311","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2c17746w","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2c17746w","pdf_url":"https://escholarship.org/content/qt2c17746w/qt2c17746w.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 40, iss 12","raw_type":"article"},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/755582","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/755582","pdf_url":"https://lirias.kuleuven.be/retrieve/c4557978-d2cd-4e9a-b733-34799aa37bf3","source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol. 40 (12)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11652268","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11652268","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11652268/pdf/btae721.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/3ab87ca7-3774-4b78-a6a9-80f023cbc5c9","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/files/485595582/btae721.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Li, Y, Bollen, N, Hong, S L, Brusselmans, M, Gambaro, F, Klaps, J, Suchard, M A, Rambaut, A, Lemey, P, Dellicour, S & Baele, G 2024, 'spread.gl: visualizing pathogen dispersal in a high-performance browser application', Bioinformatics, vol. 40, no. 12, btae721. https://doi.org/10.1093/bioinformatics/btae721","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/3ab87ca7-3774-4b78-a6a9-80f023cbc5c9","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/3ab87ca7-3774-4b78-a6a9-80f023cbc5c9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Li, Y, Bollen, N, Hong, S L, Brusselmans, M, Gambaro, F, Klaps, J, Suchard, M A, Rambaut, A, Lemey, P, Dellicour, S & Baele, G 2024, 'spread.gl: visualizing pathogen dispersal in a high-performance browser application', Bioinformatics, vol. 40, no. 12, btae721. https://doi.org/10.1093/bioinformatics/btae721","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae721","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae721","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4695743940","display_name":null,"funder_award_id":"206298/Z/17/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W2088267428","https://openalex.org/W2105811945","https://openalex.org/W2139166200","https://openalex.org/W2341341327","https://openalex.org/W2467097626","https://openalex.org/W2614464134","https://openalex.org/W2807308836","https://openalex.org/W2901954177","https://openalex.org/W2949567053","https://openalex.org/W2951878836","https://openalex.org/W2952045272","https://openalex.org/W3014125413","https://openalex.org/W3119130323","https://openalex.org/W3183741867","https://openalex.org/W4200383655","https://openalex.org/W4297360240","https://openalex.org/W4319315911"],"related_works":["https://openalex.org/W3193971388","https://openalex.org/W4388363453","https://openalex.org/W1974204627","https://openalex.org/W2001207513","https://openalex.org/W2835754784","https://openalex.org/W1998440774","https://openalex.org/W3112881275","https://openalex.org/W2896271600","https://openalex.org/W2745540247","https://openalex.org/W1972293988"],"abstract_inverted_index":{"MOTIVATION:":[0],"Bayesian":[1],"phylogeographic":[2,20,51,118],"analyses":[3],"are":[4,141],"pivotal":[5],"in":[6],"reconstructing":[7],"the":[8,16,54,67,77,104,113],"spatio-temporal":[9],"dispersal":[10,59,96],"histories":[11],"of":[12,19,56,69,107,116,139],"pathogens.":[13],"However,":[14],"interpreting":[15],"complex":[17],"outcomes":[18],"reconstructions":[21],"requires":[22],"sophisticated":[23],"visualization":[24,44,68,105],"tools.":[25],"RESULTS:":[26],"To":[27],"meet":[28],"this":[29],"challenge,":[30],"we":[31],"developed":[32],"spread.gl,":[33],"an":[34],"open-source,":[35],"feature-rich":[36],"browser":[37],"application":[38],"offering":[39],"a":[40,117],"smooth":[41,114],"and":[42,49,65,80,137],"intuitive":[43],"tool":[45],"for":[46],"both":[47],"discrete":[48],"continuous":[50],"inferences,":[52],"including":[53,112],"animation":[55,115],"pathogen":[57,95],"geographic":[58],"through":[60],"time.":[61],"Spread.gl":[62],"can":[63],"render":[64],"combine":[66],"multiple":[70],"layers":[71],"that":[72],"contain":[73],"information":[74],"extracted":[75],"from":[76],"input":[78,135],"phylogeny":[79],"diverse":[81],"environmental":[82,90],"data":[83],"layers,":[84],"enabling":[85],"researchers":[86],"to":[87],"explore":[88],"which":[89],"factors":[91],"may":[92],"have":[93],"impacted":[94],"patterns":[97],"before":[98],"conducting":[99],"formal":[100],"testing.":[101],"We":[102],"showcase":[103],"features":[106],"spread.gl":[108,140],"with":[109],"representative":[110],"examples,":[111],"reconstruction":[119],"based":[120],"on":[121],">17":[122],"000":[123],"SARS-CoV-2":[124],"genomic":[125],"sequences.":[126],"AVAILABILITY":[127],"AND":[128],"IMPLEMENTATION:":[129],"Source":[130],"code,":[131],"installation":[132],"instructions,":[133],"example":[134],"data,":[136],"outputs":[138],"accessible":[142],"at":[143],"https://github.com/GuyBaele/SpreadGL.":[144]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":7}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2024-12-04T00:00:00"}
