{"id":"https://openalex.org/W4404742526","doi":"https://doi.org/10.1093/bioinformatics/btae713","title":"STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication","display_name":"STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication","publication_year":2024,"publication_date":"2024-11-26","ids":{"openalex":"https://openalex.org/W4404742526","doi":"https://doi.org/10.1093/bioinformatics/btae713","pmid":"https://pubmed.ncbi.nlm.nih.gov/39589865"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae713","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae713","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae713","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045539066","display_name":"Jared Andrews","orcid":"https://orcid.org/0000-0002-0780-6248"},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jared M Andrews","raw_affiliation_strings":["Department of Developmental Neurobiology, St. Jude Children's Research Hospital , Memphis, TN 38105,","Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, United States"],"raw_orcid":"https://orcid.org/0000-0002-0780-6248","affiliations":[{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Children's Research Hospital , Memphis, TN 38105,","institution_ids":["https://openalex.org/I1313298211"]},{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, United States","institution_ids":["https://openalex.org/I1313298211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033794542","display_name":"Michael W. Lloyd","orcid":"https://orcid.org/0000-0003-1021-8129"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael W Lloyd","raw_affiliation_strings":["The Jackson Laboratory , Bar Harbor, ME 04609,","The Jackson Laboratory, Bar Harbor, ME 04609, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory , Bar Harbor, ME 04609,","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME 04609, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090619305","display_name":"Steven B. Neuhauser","orcid":"https://orcid.org/0000-0002-2993-9324"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven B Neuhauser","raw_affiliation_strings":["The Jackson Laboratory , Bar Harbor, ME 04609,","The Jackson Laboratory, Bar Harbor, ME 04609, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory , Bar Harbor, ME 04609,","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME 04609, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037438967","display_name":"Margaret Bundy","orcid":"https://orcid.org/0000-0003-1030-4828"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret Bundy","raw_affiliation_strings":["The Jackson Laboratory , Sacramento, CA 95838,","The Jackson Laboratory, Sacramento, CA 95838, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory , Sacramento, CA 95838,","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Sacramento, CA 95838, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016197454","display_name":"Emily L. Jocoy","orcid":"https://orcid.org/0000-0002-1583-8020"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily L Jocoy","raw_affiliation_strings":["The Jackson Laboratory , Sacramento, CA 95838,","The Jackson Laboratory, Sacramento, CA 95838, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory , Sacramento, CA 95838,","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Sacramento, CA 95838, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059368484","display_name":"Susan Airhart","orcid":"https://orcid.org/0000-0001-7040-1238"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan D Airhart","raw_affiliation_strings":["The Jackson Laboratory , Bar Harbor, ME 04609,","The Jackson Laboratory, Bar Harbor, ME 04609, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory , Bar Harbor, ME 04609,","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME 04609, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028990206","display_name":"Carol J. Bult","orcid":"https://orcid.org/0000-0001-9433-210X"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol J Bult","raw_affiliation_strings":["The Jackson Laboratory , Bar Harbor, ME 04609,","The Jackson Laboratory, Bar Harbor, ME 04609, United States"],"raw_orcid":"https://orcid.org/0000-0001-9433-210X","affiliations":[{"raw_affiliation_string":"The Jackson Laboratory , Bar Harbor, ME 04609,","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME 04609, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044153234","display_name":"Yvonne A. Evrard","orcid":"https://orcid.org/0000-0002-3475-4850"},"institutions":[{"id":"https://openalex.org/I114662689","display_name":"Leidos (United States)","ror":"https://ror.org/012cvds63","country_code":"US","type":"company","lineage":["https://openalex.org/I114662689"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yvonne A Evrard","raw_affiliation_strings":["Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research , Frederick, MD 21701,","Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research, Frederick, MD 21701, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research , Frederick, MD 21701,","institution_ids":["https://openalex.org/I114662689","https://openalex.org/I4210130649"]},{"raw_affiliation_string":"Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research, Frederick, MD 21701, United States","institution_ids":["https://openalex.org/I114662689","https://openalex.org/I4210130649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078627287","display_name":"Jeffrey H. Chuang","orcid":"https://orcid.org/0000-0002-3298-2358"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]},{"id":"https://openalex.org/I4405260184","display_name":"The Jackson Laboratory for Genomic Medicine","ror":"https://ror.org/03cew3973","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey H Chuang","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine, Farmington , CT 06032,","The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington , CT 06032,","institution_ids":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]},{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, United States","institution_ids":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008750803","display_name":"Suzanne J. Baker","orcid":"https://orcid.org/0000-0002-5833-472X"},"institutions":[{"id":"https://openalex.org/I1313298211","display_name":"St. Jude Children's Research Hospital","ror":"https://ror.org/02r3e0967","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1313298211","https://openalex.org/I2802152183"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanne Baker","raw_affiliation_strings":["Department of Developmental Neurobiology, St. Jude Children's Research Hospital , Memphis, TN 38105,","Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Children's Research Hospital , Memphis, TN 38105,","institution_ids":["https://openalex.org/I1313298211"]},{"raw_affiliation_string":"Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, United States","institution_ids":["https://openalex.org/I1313298211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5045539066"],"corresponding_institution_ids":["https://openalex.org/I1313298211"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7771,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.76669543,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.09709999710321426,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.09709999710321426,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.05570000037550926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.04780000075697899,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8556448817253113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8336714506149292},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.67344069480896},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.55934739112854},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.519443929195404},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4994189739227295},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32813596725463867},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.32651445269584656},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2768051028251648}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8556448817253113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8336714506149292},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.67344069480896},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.55934739112854},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.519443929195404},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4994189739227295},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32813596725463867},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.32651445269584656},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2768051028251648}],"mesh":[{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081163","descriptor_name":"Cell Line Authentication","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae713","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae713","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39589865","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39589865","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11634538","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11634538","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11634538/pdf/btae713.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:mouseion.jax.org:stfb2024-1298","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2024/277","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2024","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae713","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae713","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1470995819","display_name":null,"funder_award_id":"P01CA-096832","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G1707785091","display_name":null,"funder_award_id":"P01 CA096832","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G278894908","display_name":null,"funder_award_id":"P30CA034196","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3503792436","display_name":null,"funder_award_id":"#HHSN261200800001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3575695397","display_name":null,"funder_award_id":"U24 CA224067","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G386607036","display_name":null,"funder_award_id":"HHSN261200800001E)","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4585269469","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G5794080821","display_name":null,"funder_award_id":"U24 CA224067","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1964513663","https://openalex.org/W1964677287","https://openalex.org/W2015270439","https://openalex.org/W2068875547","https://openalex.org/W2093250472","https://openalex.org/W2117923091","https://openalex.org/W2157825735","https://openalex.org/W2167358358","https://openalex.org/W2178005554","https://openalex.org/W2519505351","https://openalex.org/W2554648560","https://openalex.org/W2574356023","https://openalex.org/W2727917467","https://openalex.org/W2767840557","https://openalex.org/W2789683369","https://openalex.org/W2965206386","https://openalex.org/W2969834264","https://openalex.org/W3198899702","https://openalex.org/W3208168144","https://openalex.org/W4229449304","https://openalex.org/W4283585349","https://openalex.org/W4395466910","https://openalex.org/W6713441899"],"related_works":["https://openalex.org/W2207495067","https://openalex.org/W1906486629","https://openalex.org/W2132241624","https://openalex.org/W4311683883","https://openalex.org/W4212902261","https://openalex.org/W4400311305","https://openalex.org/W2790811106","https://openalex.org/W4385413248","https://openalex.org/W2789551765","https://openalex.org/W3097598351"],"abstract_inverted_index":{"SUMMARY:":[0],"Short":[1],"tandem":[2],"repeat":[3],"(STR)":[4],"profiling":[5],"is":[6,82,138,144],"commonly":[7],"performed":[8],"for":[9,54],"authentication":[10],"of":[11,14,25],"biomedical":[12],"models":[13],"human":[15],"origin,":[16],"yet":[17],"no":[18],"tools":[19],"exist":[20],"to":[21,28,70],"easily":[22],"compare":[23],"sets":[24],"STR":[26,55],"profiles":[27],"each":[29],"other":[30],"or":[31,68],"an":[32,114],"existing":[33],"database":[34,122],"in":[35],"a":[36,43,86,90,121],"high-throughput":[37],"manner.":[38],"Here,":[39],"we":[40],"present":[41],"STRprofiler,":[42],"Python":[44,87],"package,":[45],"command":[46],"line":[47,76],"tool,":[48],"and":[49,58,107,132],"Shiny":[50,117],"application":[51,118],"providing":[52],"methods":[53],"profile":[56],"comparison":[57],"cross-contamination":[59],"detection.":[60],"STRprofiler":[61,81,116],"can":[62],"be":[63],"run":[64],"with":[65,89,96,123],"custom":[66],"databases":[67],"used":[69],"query":[71],"against":[72],"the":[73,101,126],"Cellosaurus":[74],"cell":[75],"database.":[77],"AVAILABILITY":[78],"AND":[79],"IMPLEMENTATION:":[80],"freely":[83],"available":[84,99,139,145],"as":[85],"package":[88],"rich":[91],"CLI":[92],"from":[93,125],"PyPI":[94],"https://pypi.org/project/strprofiler/":[95],"source":[97],"code":[98],"under":[100],"MIT":[102],"license":[103],"on":[104],"GitHub":[105],"https://github.com/j-andrews7/strprofiler":[106],"at":[108,140,146],"https://zenodo.org/records/10989034.":[109],"A":[110],"web":[111],"server":[112],"hosting":[113],"example":[115],"backed":[119],"by":[120],"data":[124],"National":[127],"Cancer":[128],"Institute-funded":[129],"PDXNet":[130],"consortium":[131],"The":[133],"Jackson":[134],"Laboratory":[135],"PDX":[136],"program":[137],"https://sj-bakerlab.shinyapps.io/strprofiler/.":[141],"Full":[142],"documentation":[143],"https://strprofiler.readthedocs.io/en/latest/.":[147]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
