{"id":"https://openalex.org/W4404784382","doi":"https://doi.org/10.1093/bioinformatics/btae712","title":"Phasing nanopore genome assembly by integrating heterozygous variations and Hi-C data","display_name":"Phasing nanopore genome assembly by integrating heterozygous variations and Hi-C data","publication_year":2024,"publication_date":"2024-11-27","ids":{"openalex":"https://openalex.org/W4404784382","doi":"https://doi.org/10.1093/bioinformatics/btae712","pmid":"https://pubmed.ncbi.nlm.nih.gov/39602797"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae712","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae712","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae712","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115591442","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-3067-2620"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210135052","display_name":"Hunan Entry-Exit Inspection and Quarantine Bureau","ror":"https://ror.org/03ty5px05","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210135052"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","Xiangjiang Laboratory , Changsha, Hunan 410205,","Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, Hunan 410083, China","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","Xiangjiang Laboratory, Changsha, Hunan 410013, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Xiangjiang Laboratory , Changsha, Hunan 410205,","institution_ids":["https://openalex.org/I4210135052"]},{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Xiangjiang Laboratory, Changsha, Hunan 410013, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025266142","display_name":"Fan Nie","orcid":"https://orcid.org/0000-0003-1013-5235"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210135052","display_name":"Hunan Entry-Exit Inspection and Quarantine Bureau","ror":"https://ror.org/03ty5px05","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210135052"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Nie","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","Xiangjiang Laboratory , Changsha, Hunan 410205,","Xiangjiang Laboratory, Changsha, Hunan 410013, China","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Xiangjiang Laboratory , Changsha, Hunan 410205,","institution_ids":["https://openalex.org/I4210135052"]},{"raw_affiliation_string":"Xiangjiang Laboratory, Changsha, Hunan 410013, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100683466","display_name":"Feng Luo","orcid":"https://orcid.org/0000-0002-4813-2403"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feng Luo","raw_affiliation_strings":["School of Computing, Clemson University , Clemson, SC 29634-0974,","School of Computing, Clemson University, Clemson, SC 29634-0974, United States"],"raw_orcid":"https://orcid.org/0000-0002-4813-2403","affiliations":[{"raw_affiliation_string":"School of Computing, Clemson University , Clemson, SC 29634-0974,","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"School of Computing, Clemson University, Clemson, SC 29634-0974, United States","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210135052","display_name":"Hunan Entry-Exit Inspection and Quarantine Bureau","ror":"https://ror.org/03ty5px05","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210135052"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","Xiangjiang Laboratory , Changsha, Hunan 410205,","Xiangjiang Laboratory, Changsha, Hunan 410013, China","Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, Hunan 410083, China","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":"https://orcid.org/0000-0003-1516-0480","affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Xiangjiang Laboratory , Changsha, Hunan 410205,","institution_ids":["https://openalex.org/I4210135052"]},{"raw_affiliation_string":"Xiangjiang Laboratory, Changsha, Hunan 410013, China","institution_ids":[]},{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100438360"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210135052"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2016,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57646118,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9422000050544739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9422000050544739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.013199999928474426,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phaser","display_name":"Phaser","score":0.9010920524597168},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.6579490900039673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49947333335876465},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.48069506883621216},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47341567277908325},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.472430557012558},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.42567962408065796},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42277854681015015},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35431307554244995},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3362323045730591},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2574201822280884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2571829557418823},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.24651473760604858},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.22848987579345703},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18549230694770813},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15034916996955872}],"concepts":[{"id":"https://openalex.org/C135393689","wikidata":"https://www.wikidata.org/wiki/Q1551588","display_name":"Phaser","level":2,"score":0.9010920524597168},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.6579490900039673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49947333335876465},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.48069506883621216},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47341567277908325},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.472430557012558},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.42567962408065796},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42277854681015015},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35431307554244995},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3362323045730591},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2574201822280884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2571829557418823},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.24651473760604858},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.22848987579345703},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18549230694770813},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15034916996955872},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae712","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae712","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39602797","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39602797","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11663803","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11663803","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11663803/pdf/btae712.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae712","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae712","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2651725945","display_name":null,"funder_award_id":"62350004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8324054742","display_name":null,"funder_award_id":"62332020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2108234281","https://openalex.org/W2155628349","https://openalex.org/W2538143681","https://openalex.org/W2560383108","https://openalex.org/W2779975541","https://openalex.org/W2897774129","https://openalex.org/W2964989753","https://openalex.org/W2969330652","https://openalex.org/W3022783334","https://openalex.org/W3033870872","https://openalex.org/W3047598142","https://openalex.org/W3085758516","https://openalex.org/W3112640289","https://openalex.org/W3113006061","https://openalex.org/W3159240957","https://openalex.org/W3159728495","https://openalex.org/W3159918988","https://openalex.org/W3202634790","https://openalex.org/W4220668127","https://openalex.org/W4313430580","https://openalex.org/W4376133202","https://openalex.org/W4383876372","https://openalex.org/W4389508487","https://openalex.org/W4393972400","https://openalex.org/W4394666350","https://openalex.org/W4394856487"],"related_works":["https://openalex.org/W2163341755","https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2146741998","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2166354960","https://openalex.org/W2466266952","https://openalex.org/W2131321814","https://openalex.org/W1888102361"],"abstract_inverted_index":{"MOTIVATION:":[0],"Haplotype-resolved":[1],"genome":[2],"assemblies":[3,24],"serve":[4],"as":[5],"vital":[6],"resources":[7],"in":[8,101],"various":[9,170],"research":[10],"domains,":[11],"including":[12],"genomics,":[13],"medicine,":[14],"and":[15,127,136,150,167,184],"pangenomics.":[16],"Algorithms":[17],"employing":[18],"Hi-C":[19,44,63,75,86,104,123,142],"data":[20],"to":[21,29,40,50,118,128,139],"generate":[22],"haplotype-resolved":[23],"are":[25],"particularly":[26],"advantageous":[27],"due":[28],"its":[30,157],"ready":[31],"availability.":[32],"Existing":[33],"methods":[34],"primarily":[35],"depend":[36],"on":[37,169],"mapping":[38,56,68,134],"quality":[39,57,69,135],"filter":[41,140],"out":[42,60],"uninformative":[43,103,141],"alignments":[45,87,124],"which":[46],"may":[47],"be":[48,89],"susceptible":[49],"sequencing":[51],"errors.":[52],"Setting":[53],"a":[54,66,82,110,161,179,191],"high":[55,78],"threshold":[58,70],"filters":[59],"numerous":[61],"informative":[62,122],"alignments,":[64,143],"whereas":[65],"low":[67],"compromises":[71],"the":[72,121,146,151],"accuracy":[73,79,147,188],"of":[74,85,148,153,164,202],"alignments.":[76,105],"Maintaining":[77],"while":[80,189],"retaining":[81],"maximum":[83],"number":[84],"can":[88],"challenging.":[90],"RESULTS:":[91],"In":[92],"our":[93],"experiments,":[94],"heterozygous":[95,116,137],"variations":[96,117,138],"play":[97],"an":[98],"important":[99],"role":[100],"filtering":[102],"Here,":[106],"we":[107,159],"introduce":[108],"Diphase,":[109,165],"novel":[111],"phasing":[112,126,149,187],"tool":[113],"that":[114,176],"harnesses":[115],"accurately":[119],"identify":[120],"for":[125],"extend":[129],"primary/alternate":[130],"assemblies.":[131],"Diphase":[132,177,203],"leverages":[133],"thereby":[144],"enhancing":[145],"detection":[152],"switches.":[154],"To":[155],"validate":[156],"performance,":[158],"conducted":[160],"comparative":[162],"analysis":[163],"FALCON-Phase,":[166],"GFAse":[168],"human":[171],"datasets.":[172],"The":[173,199],"results":[174],"demonstrate":[175],"achieves":[178],"longer":[180],"phased":[181],"block":[182],"N50":[183],"exhibits":[185],"higher":[186],"maintaining":[190],"lower":[192],"hamming":[193],"error":[194],"rate.":[195],"AVAILABILITY":[196],"AND":[197],"IMPLEMENTATION:":[198],"source":[200],"code":[201],"is":[204],"available":[205],"at":[206],"https://github.com/zhangjuncsu/Diphase.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
