{"id":"https://openalex.org/W4404742530","doi":"https://doi.org/10.1093/bioinformatics/btae709","title":"Virtual tissue expression analysis","display_name":"Virtual tissue expression analysis","publication_year":2024,"publication_date":"2024-11-24","ids":{"openalex":"https://openalex.org/W4404742530","doi":"https://doi.org/10.1093/bioinformatics/btae709","pmid":"https://pubmed.ncbi.nlm.nih.gov/39589902"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae709","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae709","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083781067","display_name":"Jakob Simeth","orcid":"https://orcid.org/0000-0002-7832-2582"},"institutions":[{"id":"https://openalex.org/I3129555431","display_name":"University Hospital Regensburg","ror":"https://ror.org/01226dv09","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I3129555431"]},{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jakob Simeth","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","NGS and Data Technologies Core, Leibniz Institute for Immunotherapy (LIT) , c/o Universit\u00e4tsklinikum Regensburg, Franz-Josef-Strauss Allee 11 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","University of Regensburg Statistical Bioinformatics, Faculty of Informatics and Data Science, , Am Biopark 9, 93053, Regensburg"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"NGS and Data Technologies Core, Leibniz Institute for Immunotherapy (LIT) , c/o Universit\u00e4tsklinikum Regensburg, Franz-Josef-Strauss Allee 11 , 93053 Regensburg,","institution_ids":["https://openalex.org/I3129555431","https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"University of Regensburg Statistical Bioinformatics, Faculty of Informatics and Data Science, , Am Biopark 9, 93053, Regensburg","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063053626","display_name":"Paul H\u00fcttl","orcid":"https://orcid.org/0009-0007-6959-8003"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul H\u00fcttl","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043556428","display_name":"Marian Sch\u00f6n","orcid":"https://orcid.org/0000-0003-0882-5392"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marian Sch\u00f6n","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093279217","display_name":"Zahra Nozari","orcid":null},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Zahra Nozari","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014447623","display_name":"Michael Huttner","orcid":"https://orcid.org/0000-0002-3766-5909"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Huttner","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076520736","display_name":"Tobias S. Schmidt","orcid":"https://orcid.org/0000-0002-7971-2187"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Schmidt","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041687654","display_name":"Michael Altenbuchinger","orcid":"https://orcid.org/0000-0003-1102-6532"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Altenbuchinger","raw_affiliation_strings":["Department of Medical Bioinformatics, University Medical Center G\u00f6ttingen , 37077 G\u00f6ttingen,","University Medical Center G\u00f6ttingen Department of Medical Bioinformatics, , Goldschmidtstr. 1, 37077\u2009G\u00f6ttingen,"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, University Medical Center G\u00f6ttingen , 37077 G\u00f6ttingen,","institution_ids":["https://openalex.org/I74656192","https://openalex.org/I4210116730"]},{"raw_affiliation_string":"University Medical Center G\u00f6ttingen Department of Medical Bioinformatics, , Goldschmidtstr. 1, 37077\u2009G\u00f6ttingen,","institution_ids":["https://openalex.org/I4210116730"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003217898","display_name":"Rainer Spang","orcid":"https://orcid.org/0000-0002-1326-4297"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rainer Spang","raw_affiliation_strings":["Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg , Am Biopark 9 , 93053 Regensburg,","institution_ids":["https://openalex.org/I60668342"]},{"raw_affiliation_string":"Statistical Bioinformatics, Faculty of Informatics and Data Science, University of Regensburg, Am Biopark 9, 93053, Regensburg Germany","institution_ids":["https://openalex.org/I60668342"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5083781067"],"corresponding_institution_ids":["https://openalex.org/I3129555431","https://openalex.org/I60668342"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1295,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.78384924,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.9070000052452087,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9036999940872192,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6662325859069824},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6343271732330322},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5816236138343811},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5298758745193481},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.507745623588562},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4835802912712097},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43946611881256104},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4334319829940796},{"id":"https://openalex.org/keywords/germinal-center","display_name":"Germinal center","score":0.4273498058319092},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4258948266506195},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32644712924957275},{"id":"https://openalex.org/keywords/b-cell","display_name":"B cell","score":0.2335885763168335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22860115766525269},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21210899949073792},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12442880868911743},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11596307158470154}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6662325859069824},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6343271732330322},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5816236138343811},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5298758745193481},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.507745623588562},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4835802912712097},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43946611881256104},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4334319829940796},{"id":"https://openalex.org/C96926380","wikidata":"https://www.wikidata.org/wiki/Q1737968","display_name":"Germinal center","level":4,"score":0.4273498058319092},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4258948266506195},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32644712924957275},{"id":"https://openalex.org/C2778453870","wikidata":"https://www.wikidata.org/wiki/Q188930","display_name":"B cell","level":3,"score":0.2335885763168335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22860115766525269},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21210899949073792},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12442880868911743},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11596307158470154},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016403","descriptor_name":"Lymphoma, Large B-Cell, Diffuse","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btae709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae709","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39589902","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39589902","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:epub.uni-regensburg.de:59721","is_oa":true,"landing_page_url":"http://orcid.org/0000-0002-7832-2582>,","pdf_url":"https://epub.uni-regensburg.de/59721/1/btae709.pdf","source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"NonPeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:11631471","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11631471","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11631471/pdf/btae709.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/146903","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/146903","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"yes"},{"id":"doi:10.5283/epub.59721","is_oa":true,"landing_page_url":"https://doi.org/10.5283/epub.59721","pdf_url":null,"source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae709","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae709","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6667096975","display_name":null,"funder_award_id":"AL 2355/1-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1970060763","https://openalex.org/W1976564639","https://openalex.org/W2000359198","https://openalex.org/W2037796411","https://openalex.org/W2045067923","https://openalex.org/W2130430382","https://openalex.org/W2139954541","https://openalex.org/W2147246240","https://openalex.org/W2150382709","https://openalex.org/W2155388222","https://openalex.org/W2158485828","https://openalex.org/W2797584152","https://openalex.org/W2801763724","https://openalex.org/W2921330004","https://openalex.org/W2921650138","https://openalex.org/W2942610007","https://openalex.org/W2952240309","https://openalex.org/W2963809997","https://openalex.org/W2971233697","https://openalex.org/W3004333698","https://openalex.org/W3035551042","https://openalex.org/W3096055070","https://openalex.org/W3119889556","https://openalex.org/W3145087249","https://openalex.org/W3204930657","https://openalex.org/W4224470052","https://openalex.org/W4303646993","https://openalex.org/W4385275701","https://openalex.org/W4400140816"],"related_works":["https://openalex.org/W3009549504","https://openalex.org/W1909251229","https://openalex.org/W2338738911","https://openalex.org/W2073496055","https://openalex.org/W2045912857","https://openalex.org/W4313561237","https://openalex.org/W2022339690","https://openalex.org/W2163155097","https://openalex.org/W2056583190","https://openalex.org/W4239586347"],"abstract_inverted_index":{"R":[0],"package":[1],"available":[2,16],"at":[3,17],"https://github.com/spang-lab/tissueResolver":[4],"(archived":[5],"as":[6,20],"10.5281/zenodo.14160846).Code":[7],"for":[8],"reproducing":[9],"the":[10],"results":[11],"of":[12],"this":[13],"article":[14],"is":[15],"https://github.com/spang-lab/tissueResolver-docs":[18],"archived":[19],"swh:1:dir:faea2d4f0ded30de774b28e028299ddbdd0c4f89).":[21]},"counts_by_year":[{"year":2025,"cited_by_count":5}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
