{"id":"https://openalex.org/W4404547508","doi":"https://doi.org/10.1093/bioinformatics/btae667","title":"Micro-DeMix: a mixture beta-multinomial model for investigating the heterogeneity of the stool microbiome compositions","display_name":"Micro-DeMix: a mixture beta-multinomial model for investigating the heterogeneity of the stool microbiome compositions","publication_year":2024,"publication_date":"2024-11-19","ids":{"openalex":"https://openalex.org/W4404547508","doi":"https://doi.org/10.1093/bioinformatics/btae667","pmid":"https://pubmed.ncbi.nlm.nih.gov/39563467"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae667","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae667/60762628/btae667.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae667/60762628/btae667.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018119943","display_name":"Ruoqian Liu","orcid":"https://orcid.org/0000-0003-1636-985X"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruoqian Liu","raw_affiliation_strings":["School of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85251,","School of Mathematical and Statistical Sciences, Arizona State University, Arizona, 85281, United States"],"affiliations":[{"raw_affiliation_string":"School of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85251,","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"School of Mathematical and Statistical Sciences, Arizona State University, Arizona, 85281, United States","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yue Wang","orcid":"https://orcid.org/0000-0002-4847-8826"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Department of Biostatistics and Informatics, Colorado School of Public Health , Aurora, CO 80045,","Department of Biostatistics and Informatics, Colorado School of Public Health, Colorado, 80045, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Informatics, Colorado School of Public Health , Aurora, CO 80045,","institution_ids":["https://openalex.org/I151808059"]},{"raw_affiliation_string":"Department of Biostatistics and Informatics, Colorado School of Public Health, Colorado, 80045, United States","institution_ids":["https://openalex.org/I151808059"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046178835","display_name":"Dan Cheng","orcid":"https://orcid.org/0000-0002-0589-0167"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan Cheng","raw_affiliation_strings":["School of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85251,","School of Mathematical and Statistical Sciences, Arizona State University, Arizona, 85281, United States"],"affiliations":[{"raw_affiliation_string":"School of Mathematical and Statistical Sciences, Arizona State University, Tempe, AZ 85251,","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"School of Mathematical and Statistical Sciences, Arizona State University, Arizona, 85281, United States","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I151808059"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18535271,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9491000175476074,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.9086264967918396},{"id":"https://openalex.org/keywords/gut-microbiome","display_name":"Gut microbiome","score":0.6301765441894531},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.4853159785270691},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4566759765148163},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42952659726142883},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32433468103408813},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26077979803085327}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.9086264967918396},{"id":"https://openalex.org/C3019978661","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut microbiome","level":3,"score":0.6301765441894531},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.4853159785270691},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4566759765148163},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42952659726142883},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32433468103408813},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26077979803085327}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015212","descriptor_name":"Inflammatory Bowel Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btae667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae667","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae667/60762628/btae667.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39563467","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39563467","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae667","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae667","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae667/60762628/btae667.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4734243951","display_name":null,"funder_award_id":"DMS-2220523","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404547508.pdf","grobid_xml":"https://content.openalex.org/works/W4404547508.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W30236741","https://openalex.org/W1564554007","https://openalex.org/W1902150932","https://openalex.org/W2004014148","https://openalex.org/W2020328455","https://openalex.org/W2048502267","https://openalex.org/W2049633694","https://openalex.org/W2056279562","https://openalex.org/W2097875133","https://openalex.org/W2102453940","https://openalex.org/W2114104545","https://openalex.org/W2118629634","https://openalex.org/W2143777796","https://openalex.org/W2146512944","https://openalex.org/W2179438025","https://openalex.org/W2259701580","https://openalex.org/W2395812788","https://openalex.org/W2471545969","https://openalex.org/W2600254651","https://openalex.org/W2896473060","https://openalex.org/W2945081228","https://openalex.org/W2953723237","https://openalex.org/W2963761043","https://openalex.org/W2966933380","https://openalex.org/W2987356303","https://openalex.org/W2990249310","https://openalex.org/W3009569679","https://openalex.org/W3017072931","https://openalex.org/W3042498397","https://openalex.org/W3046635956","https://openalex.org/W3112672573","https://openalex.org/W3201482214","https://openalex.org/W4206445672","https://openalex.org/W4284989438","https://openalex.org/W4293000213","https://openalex.org/W4316927242","https://openalex.org/W4319964771","https://openalex.org/W6631383449","https://openalex.org/W6680609144","https://openalex.org/W6712244149"],"related_works":["https://openalex.org/W2994966085","https://openalex.org/W2595711621","https://openalex.org/W1968369492","https://openalex.org/W3044286215","https://openalex.org/W4402517148","https://openalex.org/W2043102924","https://openalex.org/W2965705087","https://openalex.org/W4213248990","https://openalex.org/W2621141937","https://openalex.org/W4312476285"],"abstract_inverted_index":{"The":[0],"R":[1],"package":[2],"is":[3],"available":[4],"at":[5],"https://github.com/liuruoqian/MicroDemix.":[6]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
