{"id":"https://openalex.org/W4404092050","doi":"https://doi.org/10.1093/bioinformatics/btae657","title":"ViralPrimer: a web server to monitor viral nucleic acid amplification tests\u2019 primer efficiency during pandemics, with emphasis on SARS-CoV-2 and Mpox","display_name":"ViralPrimer: a web server to monitor viral nucleic acid amplification tests\u2019 primer efficiency during pandemics, with emphasis on SARS-CoV-2 and Mpox","publication_year":2024,"publication_date":"2024-11-01","ids":{"openalex":"https://openalex.org/W4404092050","doi":"https://doi.org/10.1093/bioinformatics/btae657","pmid":"https://pubmed.ncbi.nlm.nih.gov/39499138"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae657","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae657","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae657/60428066/btae657.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae657/60428066/btae657.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077996095","display_name":"Norbert Deutsch","orcid":"https://orcid.org/0009-0006-7459-0201"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"Norbert Deutsch","raw_affiliation_strings":["Department of Biochemistry, Institute of Biology, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Institute of Biology, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028237788","display_name":"Zsuzsanna Doszt\u00e1nyi","orcid":"https://orcid.org/0000-0002-3624-5937"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Zsuzsanna Doszt\u00e1nyi","raw_affiliation_strings":["Department of Biochemistry, Institute of Biology, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Institute of Biology, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059584176","display_name":"Istv\u00e1n Csabai","orcid":"https://orcid.org/0000-0001-9232-9898"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"Istv\u00e1n Csabai","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034622059","display_name":"Anna Medgyes\u2010Horv\u00e1th","orcid":"https://orcid.org/0000-0003-4435-5797"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"Anna Medgyes-Horv\u00e1th","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052710531","display_name":"Orsolya Pipek","orcid":"https://orcid.org/0000-0001-8109-0340"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"Orsolya Anna Pipek","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028448633","display_name":"J\u00f3zsef St\u00e9ger","orcid":"https://orcid.org/0000-0003-2836-1855"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"J\u00f3zsef St\u00e9ger","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060148278","display_name":"Kriszti\u00e1n Papp","orcid":"https://orcid.org/0000-0003-0619-8233"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"Kriszti\u00e1n Papp","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007655284","display_name":"D\u00e1vid Visontai","orcid":"https://orcid.org/0000-0002-0029-709X"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"D\u00e1vid Visontai","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032249136","display_name":"G\u00e1bor Erd\u0151s","orcid":"https://orcid.org/0000-0002-3531-3803"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"G\u00e1bor Erd\u0151s","raw_affiliation_strings":["Department of Biochemistry, Institute of Biology, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Institute of Biology, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020549744","display_name":"Anik\u00f3 Mentes","orcid":"https://orcid.org/0000-0001-9559-374X"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I4210122644","display_name":"FZU \u2012 Institute of Physics of the Academy of Sciences of the Czech Republic","ror":"https://ror.org/02yhj4v17","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210122644"]}],"countries":["CZ","HU"],"is_corresponding":false,"raw_author_name":"Anik\u00f3 Mentes","raw_affiliation_strings":["Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,"],"raw_orcid":"https://orcid.org/0000-0001-9559-374X","affiliations":[{"raw_affiliation_string":"Department of Physics of Complex Systems, Institute of Physics and Astronomy, ELTE E\u00f6tv\u00f6s Lor\u00e1nd University , Budapest H-1117,","institution_ids":["https://openalex.org/I4210122644","https://openalex.org/I106118109"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5077996095"],"corresponding_institution_ids":["https://openalex.org/I106118109"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.267,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59357188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"40","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11767","display_name":"Poxvirus research and outbreaks","score":0.7020999789237976,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11767","display_name":"Poxvirus research and outbreaks","score":0.7020999789237976,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.14550000429153442,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.04619999974966049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/primer","display_name":"Primer (cosmetics)","score":0.7718517184257507},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.7068427801132202},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6666830778121948},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6336819529533386},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6109321117401123},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.5916734933853149},{"id":"https://openalex.org/keywords/emphasis","display_name":"Emphasis (telecommunications)","score":0.5083476901054382},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5082730650901794},{"id":"https://openalex.org/keywords/nucleic-acid-amplification-tests","display_name":"Nucleic Acid Amplification Tests","score":0.4537017047405243},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3956674337387085},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38715213537216187},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19228774309158325},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11530202627182007},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09548747539520264},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.051208049058914185}],"concepts":[{"id":"https://openalex.org/C2777563447","wikidata":"https://www.wikidata.org/wiki/Q7243397","display_name":"Primer (cosmetics)","level":2,"score":0.7718517184257507},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.7068427801132202},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6666830778121948},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6336819529533386},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6109321117401123},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.5916734933853149},{"id":"https://openalex.org/C177454536","wikidata":"https://www.wikidata.org/wiki/Q578290","display_name":"Emphasis (telecommunications)","level":2,"score":0.5083476901054382},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5082730650901794},{"id":"https://openalex.org/C2909633786","wikidata":"https://www.wikidata.org/wiki/Q348667","display_name":"Nucleic Acid Amplification Tests","level":3,"score":0.4537017047405243},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3956674337387085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38715213537216187},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19228774309158325},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11530202627182007},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09548747539520264},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.051208049058914185},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C2777391075","wikidata":"https://www.wikidata.org/wiki/Q131065","display_name":"Chlamydia trachomatis","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D000087123","descriptor_name":"COVID-19 Nucleic Acid Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000087123","descriptor_name":"COVID-19 Nucleic Acid Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000087123","descriptor_name":"COVID-19 Nucleic Acid Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000087123","descriptor_name":"COVID-19 Nucleic Acid Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000087123","descriptor_name":"COVID-19 Nucleic Acid Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021141","descriptor_name":"Nucleic Acid Amplification Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021141","descriptor_name":"Nucleic Acid Amplification Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021141","descriptor_name":"Nucleic Acid Amplification Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021141","descriptor_name":"Nucleic Acid Amplification Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021141","descriptor_name":"Nucleic Acid Amplification Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D045908","descriptor_name":"Mpox, Monkeypox","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045908","descriptor_name":"Mpox, Monkeypox","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045908","descriptor_name":"Mpox (monkeypox)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae657","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae657","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae657/60428066/btae657.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39499138","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39499138","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11572492","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11572492","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11572492/pdf/btae657.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:edit.elte.hu:10831/120363","is_oa":true,"landing_page_url":"http://hdl.handle.net/10831/120363","pdf_url":null,"source":{"id":"https://openalex.org/S4306400126","display_name":"ELTE Digital Institutional Repository (EDIT) (E\u00f6tv\u00f6s Lor\u00e1nd University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I106118109","host_organization_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","host_organization_lineage":["https://openalex.org/I106118109"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae657","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae657","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae657/60428066/btae657.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7699999809265137,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2583336430","display_name":null,"funder_award_id":"874735","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G360152817","display_name":null,"funder_award_id":"UNKP-23-3","funder_id":"https://openalex.org/F4320335908","funder_display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap"},{"id":"https://openalex.org/G3690959784","display_name":null,"funder_award_id":"101046203","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5762233546","display_name":null,"funder_award_id":"DKOP-23","funder_id":"https://openalex.org/F4320335908","funder_display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap"}],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335908","display_name":"Nemzeti Kutat\u00e1si, Fejleszt\u00e9si \u00e9s Innovaci\u00f3s Alap","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404092050.pdf","grobid_xml":"https://content.openalex.org/works/W4404092050.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2990869463","https://openalex.org/W3003217347","https://openalex.org/W3004280078","https://openalex.org/W3007497549","https://openalex.org/W3010522809","https://openalex.org/W3012569595","https://openalex.org/W3013640245","https://openalex.org/W3020581768","https://openalex.org/W3020650960","https://openalex.org/W3083646103","https://openalex.org/W3106818854","https://openalex.org/W3112687415","https://openalex.org/W3164567672","https://openalex.org/W3176620861","https://openalex.org/W3183378072","https://openalex.org/W3209622805","https://openalex.org/W3213447760","https://openalex.org/W4200137031","https://openalex.org/W4210866043","https://openalex.org/W4210936403","https://openalex.org/W4213162735","https://openalex.org/W4288687355","https://openalex.org/W4307451779","https://openalex.org/W4308205086","https://openalex.org/W4366602619","https://openalex.org/W4391818496","https://openalex.org/W4391839882","https://openalex.org/W6770810092"],"related_works":["https://openalex.org/W2055105357","https://openalex.org/W2153819599","https://openalex.org/W2255426644","https://openalex.org/W4390911758","https://openalex.org/W2072124641","https://openalex.org/W2167093538","https://openalex.org/W2018956713","https://openalex.org/W2081479354","https://openalex.org/W2113107605","https://openalex.org/W3204693335"],"abstract_inverted_index":{"SUMMARY:":[0],"Accurate":[1],"pathogen":[2],"identification":[3],"is":[4,108,124],"crucial":[5],"during":[6],"outbreaks,":[7],"especially":[8],"with":[9,74,116,132],"the":[10,137],"emergence":[11],"of":[12,25,92],"new":[13],"variants":[14],"requiring":[15],"frequent":[16],"primer":[17,26,56,77,84],"updates.":[18],"However,":[19],"resources":[20],"for":[21,34],"maintaining":[22],"up-to-date":[23],"verification":[24],"sequences":[27],"are":[28],"often":[29],"limited,":[30],"which":[31],"poses":[32],"challenges":[33],"reliable":[35],"diagnosis":[36],"and":[37,59,63,82,111,136,147],"hinders":[38],"potential":[39],"monitoring":[40,91],"efforts":[41],"based":[42],"on":[43,126],"genome":[44],"sequencing.":[45],"To":[46],"address":[47],"this,":[48],"we":[49],"introduce":[50],"ViralPrimer,":[51],"a":[52,127,133],"web":[53,130],"server":[54],"facilitating":[55],"design,":[57],"SARS-CoV-2":[58],"Mpox":[60],"variant":[61],"monitoring,":[62],"adaptation":[64],"to":[65,70,98,113],"future":[66],"threats.":[67],"ViralPrimer":[68,107],"aims":[69],"enhance":[71],"diagnostic":[72],"accuracy":[73],"its":[75],"comprehensive":[76],"database,":[78,135],"mutation":[79],"analysis":[80],"assistance,":[81],"user":[83],"upload":[85],"feature.":[86],"Its":[87],"adaptable":[88],"design":[89],"allows":[90],"other":[93],"rapidly":[94],"mutating":[95],"pathogens,":[96],"contributing":[97],"broader":[99],"public":[100],"health":[101],"protection":[102],"efforts.":[103],"AVAILABILITY":[104],"AND":[105],"IMPLEMENTATION:":[106],"freely":[109],"accessible":[110],"open":[112],"all":[114],"users":[115],"no":[117],"login":[118],"requirement":[119],"at":[120],"https://viralprimer.elte.hu/.":[121],"The":[122],"application":[123],"hosted":[125],"DJANGO":[128],"v3.2.13":[129],"server,":[131],"PostgreSQL":[134],"frontend":[138],"was":[139],"implemented":[140],"using":[141],"jQuery":[142],"v3.6.0,":[143],"vanilla":[144],"JavaScript":[145],"vES6,":[146],"Bootstrap":[148],"v5.1.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-03T09:05:47.796612","created_date":"2025-10-10T00:00:00"}
