{"id":"https://openalex.org/W4403915974","doi":"https://doi.org/10.1093/bioinformatics/btae647","title":"findGSEP: estimating genome size of polyploid species using<i>k</i>-mer frequencies","display_name":"findGSEP: estimating genome size of polyploid species using<i>k</i>-mer frequencies","publication_year":2024,"publication_date":"2024-10-30","ids":{"openalex":"https://openalex.org/W4403915974","doi":"https://doi.org/10.1093/bioinformatics/btae647","pmid":"https://pubmed.ncbi.nlm.nih.gov/39475440"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae647","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae647/60248333/btae647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae647/60248333/btae647.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062656355","display_name":"Laiyi Fu","orcid":"https://orcid.org/0000-0001-9086-3982"},"institutions":[{"id":"https://openalex.org/I4210108865","display_name":"Zhejiang Institute of Communications","ror":"https://ror.org/01q17sd51","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210108865"]},{"id":"https://openalex.org/I4210119262","display_name":"Chengdu Design & Research Institute of Building Materials Industry (China)","ror":"https://ror.org/028xtjj97","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210119262"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Laiyi Fu","raw_affiliation_strings":["Research Institute of Xi\u2019an Jiaotong University , Zhejiang, Hangzhou 311200,","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","Sichuan Digital Economy Industry Development Research Institute , Chengdu 610036,","Sichuan Digital Economy Industry Development Research Institute, Chengdu, 610036, China","Research Institute of Xi'an Jiaotong University, 311200, China Zhejiang, Hangzhou","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China"],"affiliations":[{"raw_affiliation_string":"Research Institute of Xi\u2019an Jiaotong University , Zhejiang, Hangzhou 311200,","institution_ids":["https://openalex.org/I4210108865"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Sichuan Digital Economy Industry Development Research Institute , Chengdu 610036,","institution_ids":["https://openalex.org/I4210119262"]},{"raw_affiliation_string":"Sichuan Digital Economy Industry Development Research Institute, Chengdu, 610036, China","institution_ids":[]},{"raw_affiliation_string":"Research Institute of Xi'an Jiaotong University, 311200, China Zhejiang, Hangzhou","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101034695","display_name":"Yanxin Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanxin Xie","raw_affiliation_strings":["School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063265815","display_name":"Shunkang Ling","orcid":"https://orcid.org/0009-0000-8466-1583"},"institutions":[{"id":"https://openalex.org/I102208913","display_name":"Shihezi University","ror":"https://ror.org/04x0kvm78","country_code":"CN","type":"education","lineage":["https://openalex.org/I102208913"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shunkang Ling","raw_affiliation_strings":["College of Mechanical and Electrical Engineering, Shihezi University , Shihezi 832000,","College of Mechanical and Electrical Engineering, Shihezi University, Shihezi, 832000, China"],"affiliations":[{"raw_affiliation_string":"College of Mechanical and Electrical Engineering, Shihezi University , Shihezi 832000,","institution_ids":["https://openalex.org/I102208913"]},{"raw_affiliation_string":"College of Mechanical and Electrical Engineering, Shihezi University, Shihezi, 832000, China","institution_ids":["https://openalex.org/I102208913"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100645183","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0001-8483-6662"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005574898","display_name":"Binzhong Wang","orcid":"https://orcid.org/0000-0003-1165-2701"},"institutions":[{"id":"https://openalex.org/I161350542","display_name":"China Three Gorges University","ror":"https://ror.org/0419nfc77","country_code":"CN","type":"education","lineage":["https://openalex.org/I161350542"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binzhong Wang","raw_affiliation_strings":["Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes , Yichang, Hubei 443100,","Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes, Yichang, Hubei 443100, China"],"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes , Yichang, Hubei 443100,","institution_ids":["https://openalex.org/I161350542"]},{"raw_affiliation_string":"Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes, Yichang, Hubei 443100, China","institution_ids":["https://openalex.org/I161350542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103278709","display_name":"Hejun Du","orcid":"https://orcid.org/0000-0002-2959-7870"},"institutions":[{"id":"https://openalex.org/I161350542","display_name":"China Three Gorges University","ror":"https://ror.org/0419nfc77","country_code":"CN","type":"education","lineage":["https://openalex.org/I161350542"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hejun Du","raw_affiliation_strings":["Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes , Yichang, Hubei 443100,","Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes, Yichang, Hubei 443100, China"],"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes , Yichang, Hubei 443100,","institution_ids":["https://openalex.org/I161350542"]},{"raw_affiliation_string":"Hubei Key Laboratory of Three Gorges Project for Conservation of Fishes, Yichang, Hubei 443100, China","institution_ids":["https://openalex.org/I161350542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074144985","display_name":"Qinke Peng","orcid":"https://orcid.org/0000-0002-5448-8529"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinke Peng","raw_affiliation_strings":["School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078978381","display_name":"Hequan Sun","orcid":"https://orcid.org/0000-0003-2046-2109"},"institutions":[{"id":"https://openalex.org/I4210141639","display_name":"Max Planck Institute for Plant Breeding Research","ror":"https://ror.org/044g3zk14","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210141639"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN","DE"],"is_corresponding":false,"raw_author_name":"Hequan Sun","raw_affiliation_strings":["Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Cologne 50829,","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Cologne, 50829, Germany","School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China"],"affiliations":[{"raw_affiliation_string":"Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Cologne 50829,","institution_ids":["https://openalex.org/I4210141639"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi\u2019an Jiaotong University , Xi\u2019an 710049,","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Cologne, 50829, Germany","institution_ids":["https://openalex.org/I4210141639"]},{"raw_affiliation_string":"School of Automation Science and Engineering, Faculty of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5062656355"],"corresponding_institution_ids":["https://openalex.org/I4210108865","https://openalex.org/I4210119262","https://openalex.org/I87445476"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4229,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.89588443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"40","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polyploid","display_name":"Polyploid","score":0.8553303480148315},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7574901580810547},{"id":"https://openalex.org/keywords/ploidy","display_name":"Ploidy","score":0.66143798828125},{"id":"https://openalex.org/keywords/genome-size","display_name":"Genome size","score":0.6598660945892334},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5628104209899902},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5255245566368103},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5058491230010986},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4915564954280853},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.46020644903182983},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4221368134021759},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4137403666973114},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34235548973083496},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2441936433315277},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.165727436542511},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12663328647613525},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.1184023916721344}],"concepts":[{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.8553303480148315},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7574901580810547},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.66143798828125},{"id":"https://openalex.org/C61271108","wikidata":"https://www.wikidata.org/wiki/Q3180866","display_name":"Genome size","level":4,"score":0.6598660945892334},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5628104209899902},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5255245566368103},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5058491230010986},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4915564954280853},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.46020644903182983},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4221368134021759},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4137403666973114},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34235548973083496},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2441936433315277},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.165727436542511},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12663328647613525},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.1184023916721344},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059646","descriptor_name":"Genome Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059646","descriptor_name":"Genome Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059646","descriptor_name":"Genome Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059646","descriptor_name":"Genome Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059646","descriptor_name":"Genome Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae647","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae647/60248333/btae647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39475440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39475440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11552620","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11552620","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11552620/pdf/btae647.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae647","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae647/60248333/btae647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1695823015","display_name":null,"funder_award_id":"202409","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2082826544","display_name":null,"funder_award_id":"Postdoctoral","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3143919022","display_name":null,"funder_award_id":"62303372","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3179451784","display_name":null,"funder_award_id":"12024","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3403393059","display_name":null,"funder_award_id":"202313033","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3413846981","display_name":null,"funder_award_id":"xzy012024091","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4442990045","display_name":null,"funder_award_id":"2023M742794","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G4727725958","display_name":null,"funder_award_id":"2023130","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4868508342","display_name":null,"funder_award_id":"2023NSFSC1416","funder_id":"https://openalex.org/F4320329861","funder_display_name":"Natural Science Foundation of Sichuan Province"},{"id":"https://openalex.org/G5030940285","display_name":null,"funder_award_id":"2023M","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8135069870","display_name":null,"funder_award_id":"GYKP034","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320329861","display_name":"Natural Science Foundation of Sichuan Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403915974.pdf","grobid_xml":"https://content.openalex.org/works/W4403915974.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2009826108","https://openalex.org/W2096128575","https://openalex.org/W2103962160","https://openalex.org/W2104677379","https://openalex.org/W2133911869","https://openalex.org/W2167142762","https://openalex.org/W2583363792","https://openalex.org/W2762777574","https://openalex.org/W2884964182","https://openalex.org/W2949086752","https://openalex.org/W2949667635","https://openalex.org/W3012094285","https://openalex.org/W3040417581","https://openalex.org/W3186737374","https://openalex.org/W4220697504","https://openalex.org/W4243120547","https://openalex.org/W4390760984","https://openalex.org/W4394718494"],"related_works":["https://openalex.org/W2379004733","https://openalex.org/W2104566180","https://openalex.org/W2322157237","https://openalex.org/W2018908403","https://openalex.org/W2077727980","https://openalex.org/W4205453876","https://openalex.org/W1999275754","https://openalex.org/W61422302","https://openalex.org/W3097970675","https://openalex.org/W1964306913"],"abstract_inverted_index":{"\"findGSEP\"":[0,14],"was":[1,15],"implemented":[2,16],"as":[3,17],"a":[4],"web":[5],"server,":[6],"which":[7],"is":[8,36],"freely":[9],"available":[10,37],"at":[11,38],"http://146.56.237.198:3838/findGSEP/.":[12],"Also,":[13],"an":[18],"R":[19],"package":[20],"for":[21],"parallel":[22],"processing":[23],"of":[24],"multiple":[25],"samples.":[26],"Source":[27],"code":[28],"and":[29,34],"tutorial":[30],"on":[31],"its":[32],"installation":[33],"usage":[35],"https://github.com/sperfu/findGSEP.":[39]},"counts_by_year":[{"year":2025,"cited_by_count":4}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2024-10-31T00:00:00"}
