{"id":"https://openalex.org/W4404092673","doi":"https://doi.org/10.1093/bioinformatics/btae637","title":"Ranking antibody binding epitopes and proteins across samples from whole proteome tiled linear peptides","display_name":"Ranking antibody binding epitopes and proteins across samples from whole proteome tiled linear peptides","publication_year":2024,"publication_date":"2024-11-01","ids":{"openalex":"https://openalex.org/W4404092673","doi":"https://doi.org/10.1093/bioinformatics/btae637","pmid":"https://pubmed.ncbi.nlm.nih.gov/39499154"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae637","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae637","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae637","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036323056","display_name":"Sean J. McIlwain","orcid":"https://orcid.org/0000-0002-3820-8400"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I4210103341","display_name":"University of Wisconsin Carbone Cancer Center","ror":"https://ror.org/01e4byj08","country_code":"US","type":"funder","lineage":["https://openalex.org/I2799905417","https://openalex.org/I4210103341","https://openalex.org/I4210132596"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sean J McIlwain","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin-Madison Department of Biostatistics and Medical Informatics, , WI","University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , WI"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I4210103341"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Biostatistics and Medical Informatics, , WI","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , WI","institution_ids":["https://openalex.org/I4210103341","https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042246572","display_name":"Anna Hoefges","orcid":"https://orcid.org/0000-0002-3712-4854"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Hoefges","raw_affiliation_strings":["Department of Human Oncology, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin-Madison Department of Human Oncology, , WI"],"affiliations":[{"raw_affiliation_string":"Department of Human Oncology, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Human Oncology, , WI","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089532829","display_name":"Amy K. Erbe","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy K Erbe","raw_affiliation_strings":["Department of Human Oncology, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin-Madison Department of Human Oncology, , WI"],"affiliations":[{"raw_affiliation_string":"Department of Human Oncology, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Human Oncology, , WI","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011569932","display_name":"Paul M. Sondel","orcid":"https://orcid.org/0000-0002-0981-8875"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I4210103341","display_name":"University of Wisconsin Carbone Cancer Center","ror":"https://ror.org/01e4byj08","country_code":"US","type":"funder","lineage":["https://openalex.org/I2799905417","https://openalex.org/I4210103341","https://openalex.org/I4210132596"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul M Sondel","raw_affiliation_strings":["Department of Human Oncology, University of Wisconsin-Madison , Madison, WI, 53705,","Department of Pediatrics, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin-Madison Department of Pediatrics, , WI","University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , WI","University of Wisconsin-Madison Department of Human Oncology, , WI"],"affiliations":[{"raw_affiliation_string":"Department of Human Oncology, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Pediatrics, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I4210103341"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Pediatrics, , WI","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , WI","institution_ids":["https://openalex.org/I4210103341","https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Human Oncology, , WI","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019665472","display_name":"Irene M. Ong","orcid":"https://orcid.org/0000-0002-9353-6941"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I4210103341","display_name":"University of Wisconsin Carbone Cancer Center","ror":"https://ror.org/01e4byj08","country_code":"US","type":"funder","lineage":["https://openalex.org/I2799905417","https://openalex.org/I4210103341","https://openalex.org/I4210132596"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Irene M Ong","raw_affiliation_strings":["Center for Human Genomics and Precision Medicine, University of Wisconsin-Madison , Madison, WI, 53705,","Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison , Madison, WI, 53705,","Department of Obstetrics and Gynecology, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , Madison, WI, 53705,","University of Wisconsin-Madison Center for Human Genomics and Precision Medicine, , WI","University of Wisconsin-Madison Department of Obstetrics and Gynecology, , WI","University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , WI","University of Wisconsin-Madison Department of Biostatistics and Medical Informatics, , WI"],"affiliations":[{"raw_affiliation_string":"Center for Human Genomics and Precision Medicine, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , Madison, WI, 53705,","institution_ids":["https://openalex.org/I4210103341"]},{"raw_affiliation_string":"University of Wisconsin-Madison Center for Human Genomics and Precision Medicine, , WI","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Obstetrics and Gynecology, , WI","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin Carbone Comprehensive Cancer Center, University of Wisconsin-Madison , WI","institution_ids":["https://openalex.org/I4210103341","https://openalex.org/I135310074"]},{"raw_affiliation_string":"University of Wisconsin-Madison Department of Biostatistics and Medical Informatics, , WI","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5036323056"],"corresponding_institution_ids":["https://openalex.org/I135310074","https://openalex.org/I4210103341"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3909,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.66497407,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8789520263671875},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7197827100753784},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6667140126228333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5250506401062012},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.5190559029579163},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.45117560029029846},{"id":"https://openalex.org/keywords/linear-epitope","display_name":"Linear epitope","score":0.4363902807235718},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32550257444381714},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23878881335258484},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.20378488302230835},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17085504531860352},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07396590709686279}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8789520263671875},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7197827100753784},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6667140126228333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5250506401062012},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.5190559029579163},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.45117560029029846},{"id":"https://openalex.org/C78598654","wikidata":"https://www.wikidata.org/wiki/Q17140316","display_name":"Linear epitope","level":4,"score":0.4363902807235718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32550257444381714},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23878881335258484},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.20378488302230835},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17085504531860352},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07396590709686279}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae637","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae637","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39499154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39499154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11631460","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11631460","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11631460/pdf/btae637.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae637","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae637","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G128142005","display_name":null,"funder_award_id":"P01CA250972","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1359571829","display_name":null,"funder_award_id":"P01CA250972","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G1431125678","display_name":null,"funder_award_id":"CA014520","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1711654737","display_name":null,"funder_award_id":"P30 CA014520","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G1712026730","display_name":null,"funder_award_id":"CA014520","funder_id":"https://openalex.org/F4320310176","funder_display_name":"University of Wisconsin Carbone Cancer Center"},{"id":"https://openalex.org/G1901119385","display_name":null,"funder_award_id":"CA197078","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2789588635","display_name":null,"funder_award_id":"NCATS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2865187476","display_name":null,"funder_award_id":"U19AI104317","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3435677905","display_name":null,"funder_award_id":"KL2TR002374","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3568574666","display_name":null,"funder_award_id":"P30 CA01452","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3602384064","display_name":null,"funder_award_id":"TR002373","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3706328788","display_name":null,"funder_award_id":"AI104317","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G3737530300","display_name":null,"funder_award_id":"CA197078","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3884640487","display_name":null,"funder_award_id":"2U19AI104317-06","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4039876303","display_name":null,"funder_award_id":"P30 CA014520","funder_id":"https://openalex.org/F4320310176","funder_display_name":"University of Wisconsin Carbone Cancer Center"},{"id":"https://openalex.org/G4186285097","display_name":null,"funder_award_id":"CA250972","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4285274384","display_name":null,"funder_award_id":"U01-CA233102","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4667300268","display_name":null,"funder_award_id":"P30 CA014520","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4856918300","display_name":null,"funder_award_id":"P30 CA014520","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5171721139","display_name":null,"funder_award_id":"CA233102","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5541071115","display_name":null,"funder_award_id":"TR002373","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5638354291","display_name":null,"funder_award_id":"Project 3","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5819280684","display_name":null,"funder_award_id":"UL1TR00237","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G596254795","display_name":null,"funder_award_id":"KL2TR002374","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G6041166034","display_name":null,"funder_award_id":"U54-CA232568","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6365769816","display_name":null,"funder_award_id":"P30 CA014520","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6488264450","display_name":null,"funder_award_id":"R35-CA197078","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6500072199","display_name":null,"funder_award_id":"U54-CA232568","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6687117101","display_name":null,"funder_award_id":"UL1TR002373","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6902778925","display_name":null,"funder_award_id":"CA014520","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7373365013","display_name":null,"funder_award_id":"UL1TR002373","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7512500759","display_name":null,"funder_award_id":"UL1TR002373","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7547400436","display_name":null,"funder_award_id":"U19AI104317","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7692394237","display_name":null,"funder_award_id":"2U19AI104317-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8234151676","display_name":null,"funder_award_id":"R35-CA197078","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8484819510","display_name":null,"funder_award_id":"Clinic","funder_id":"https://openalex.org/F4320306155","funder_display_name":"Cancer Research Institute"},{"id":"https://openalex.org/G8803782758","display_name":null,"funder_award_id":"P30 CA014520","funder_id":"https://openalex.org/F4320306155","funder_display_name":"Cancer Research Institute"},{"id":"https://openalex.org/G8896708088","display_name":null,"funder_award_id":"AI104317","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306155","display_name":"Cancer Research Institute","ror":"https://ror.org/02f3xk561"},{"id":"https://openalex.org/F4320306589","display_name":"Alex's Lemonade Stand Foundation for Childhood Cancer","ror":"https://ror.org/038ja4880"},{"id":"https://openalex.org/F4320310176","display_name":"University of Wisconsin Carbone Cancer Center","ror":"https://ror.org/02mqqhj42"},{"id":"https://openalex.org/F4320316231","display_name":"Midwest Athletes Against Childhood Cancer","ror":null},{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337368","display_name":"Division of Graduate Education","ror":"https://ror.org/00whkrf32"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1549716303","https://openalex.org/W1973012451","https://openalex.org/W1983210486","https://openalex.org/W1985078733","https://openalex.org/W1994865855","https://openalex.org/W2038200783","https://openalex.org/W2082786279","https://openalex.org/W2087323922","https://openalex.org/W2089175718","https://openalex.org/W2092442974","https://openalex.org/W2122851743","https://openalex.org/W2170189627","https://openalex.org/W2339221558","https://openalex.org/W2346039915","https://openalex.org/W2406250479","https://openalex.org/W2511863223","https://openalex.org/W2754396261","https://openalex.org/W2883227601","https://openalex.org/W2889418962","https://openalex.org/W2907099021","https://openalex.org/W2949854354","https://openalex.org/W2964381629","https://openalex.org/W2970241796","https://openalex.org/W2972729032","https://openalex.org/W3098962209","https://openalex.org/W3170326106","https://openalex.org/W4206254216","https://openalex.org/W4210861522","https://openalex.org/W4289527519","https://openalex.org/W4290977073","https://openalex.org/W6651723475"],"related_works":["https://openalex.org/W3145510187","https://openalex.org/W2003116223","https://openalex.org/W1991572753","https://openalex.org/W1992575377","https://openalex.org/W3139969521","https://openalex.org/W4241031629","https://openalex.org/W1996102030","https://openalex.org/W2062700146","https://openalex.org/W2016943232","https://openalex.org/W2061599389"],"abstract_inverted_index":{"The":[0],"HERON":[1],"R":[2],"package":[3],"is":[4],"available":[5],"at":[6],"Bioconductor":[7],"https://bioconductor.org/packages/release/bioc/html/HERON.html.":[8]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
