{"id":"https://openalex.org/W4403597814","doi":"https://doi.org/10.1093/bioinformatics/btae628","title":"OpenDock: a pytorch-based open-source framework for protein\u2013ligand docking and modelling","display_name":"OpenDock: a pytorch-based open-source framework for protein\u2013ligand docking and modelling","publication_year":2024,"publication_date":"2024-10-21","ids":{"openalex":"https://openalex.org/W4403597814","doi":"https://doi.org/10.1093/bioinformatics/btae628","pmid":"https://pubmed.ncbi.nlm.nih.gov/39432683"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae628","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae628","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae628/59933649/btae628.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae628/59933649/btae628.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073364442","display_name":"Qiuyue Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiuyue Hu","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen, 518000,","University of Chinese Academy of Sciences , Beijing, 100049,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen, 518000,","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing, 100049,","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101519736","display_name":"Zechen Wang","orcid":"https://orcid.org/0000-0003-4554-133X"},"institutions":[{"id":"https://openalex.org/I4210104151","display_name":"Shangdong Agriculture and Engineering University","ror":"https://ror.org/01px1ve30","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210104151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zechen Wang","raw_affiliation_strings":["School of Physics, Shangdong University , Jinan, 250100,","Shangdong University, School of Physics, Licheng District, Jinan, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Shangdong University , Jinan, 250100,","institution_ids":["https://openalex.org/I4210104151"]},{"raw_affiliation_string":"Shangdong University, School of Physics, Licheng District, Jinan, China","institution_ids":["https://openalex.org/I4210104151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056275783","display_name":"Jintao Meng","orcid":"https://orcid.org/0000-0002-6208-4102"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jintao Meng","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen, 518000,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen, 518000,","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007365792","display_name":"Weifeng Li","orcid":"https://orcid.org/0000-0002-0244-2908"},"institutions":[{"id":"https://openalex.org/I4210104151","display_name":"Shangdong Agriculture and Engineering University","ror":"https://ror.org/01px1ve30","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210104151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weifeng Li","raw_affiliation_strings":["School of Physics, Shangdong University , Jinan, 250100,","Shangdong University, School of Physics, Licheng District, Jinan, China"],"affiliations":[{"raw_affiliation_string":"School of Physics, Shangdong University , Jinan, 250100,","institution_ids":["https://openalex.org/I4210104151"]},{"raw_affiliation_string":"Shangdong University, School of Physics, Licheng District, Jinan, China","institution_ids":["https://openalex.org/I4210104151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008112425","display_name":"Jingjing Guo","orcid":"https://orcid.org/0000-0002-4632-4364"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jingjing Guo","raw_affiliation_strings":["Centre in Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University , Macao SAR, 999078,"],"affiliations":[{"raw_affiliation_string":"Centre in Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University , Macao SAR, 999078,","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071286986","display_name":"Yuguang Mu","orcid":"https://orcid.org/0000-0002-2499-026X"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yuguang Mu","raw_affiliation_strings":["School of Biological Sciences, Nanyang Technological University , Singapore 637551,"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University , Singapore 637551,","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371324","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0003-4210-1670"},"institutions":[{"id":"https://openalex.org/I4210159344","display_name":"Viva Biotech (China)","ror":"https://ror.org/05p50vw42","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210159344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Shanghai Zelixir Biotech Co. Ltd , Shanghai, 201203,"],"affiliations":[{"raw_affiliation_string":"Shanghai Zelixir Biotech Co. Ltd , Shanghai, 201203,","institution_ids":["https://openalex.org/I4210159344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029472602","display_name":"Liangzhen Zheng","orcid":"https://orcid.org/0000-0003-1179-2106"},"institutions":[{"id":"https://openalex.org/I4210102308","display_name":"Lifetech Scientific (China)","ror":"https://ror.org/00qw2t413","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210102308"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liangzhen Zheng","raw_affiliation_strings":["Shenzhen Zelixir Biotech Co. Ltd , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Zelixir Biotech Co. Ltd , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210102308"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen, 518000,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences , Shenzhen, 518000,","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5029472602","https://openalex.org/A5037823825"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210102308","https://openalex.org/I4210145761"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4297,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.84218216,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"40","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.7461391687393188},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7340092658996582},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7133777737617493},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5013420581817627},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.49827051162719727},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.3888566493988037},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34863585233688354},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.31272533535957336},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.28512775897979736},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1902957558631897},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1600789725780487},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08581119775772095}],"concepts":[{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.7461391687393188},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7340092658996582},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7133777737617493},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5013420581817627},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.49827051162719727},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.3888566493988037},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34863585233688354},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.31272533535957336},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.28512775897979736},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1902957558631897},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1600789725780487},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08581119775772095},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae628","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae628","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae628/59933649/btae628.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39432683","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39432683","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11552628","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11552628","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11552628/pdf/btae628.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae628","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae628","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae628/59933649/btae628.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G186330105","display_name":"Geometric Aspects of Operator Space Theory","funder_award_id":"0200714","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1992415837","display_name":null,"funder_award_id":"131060","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2100062414","display_name":"STRUCTURAL RELATIONS BETWEEN THE MID-PACIFIC OCEANIC  RIDGES AND FRACTURE ZONES","funder_award_id":"7141147","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2298714541","display_name":null,"funder_award_id":"2020071","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2810253274","display_name":null,"funder_award_id":"Y2021101","funder_id":"https://openalex.org/F4320335892","funder_display_name":"Youth Innovation Promotion Association"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3178363158","display_name":null,"funder_award_id":"202008","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G384178317","display_name":null,"funder_award_id":"02008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4009424769","display_name":null,"funder_award_id":"62272449","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6093574916","display_name":null,"funder_award_id":"CKL075","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6591655030","display_name":null,"funder_award_id":"2023YFA0915500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6750695397","display_name":"RI: Small: Representation Learning for Semantic Mapping and Safe Robot Navigation","funder_award_id":"2007141","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G73526442","display_name":null,"funder_award_id":"20211","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7539905487","display_name":null,"funder_award_id":"202110","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7543207644","display_name":null,"funder_award_id":"2020071","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7924219151","display_name":null,"funder_award_id":"YX202007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8161904097","display_name":null,"funder_award_id":"202008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8367034557","display_name":"An Analog of Extremal Length (Mathematical Sciences)","funder_award_id":"8201131","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G839331110","display_name":null,"funder_award_id":"TD202008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8892299163","display_name":null,"funder_award_id":"2023YFF1206103","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335892","display_name":"Youth Innovation Promotion Association","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403597814.pdf","grobid_xml":"https://content.openalex.org/works/W4403597814.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1548178570","https://openalex.org/W1605578858","https://openalex.org/W1854810044","https://openalex.org/W1963553128","https://openalex.org/W1975447903","https://openalex.org/W1985588649","https://openalex.org/W1987012451","https://openalex.org/W1993285168","https://openalex.org/W2000864931","https://openalex.org/W2005126631","https://openalex.org/W2008138925","https://openalex.org/W2017663720","https://openalex.org/W2021441744","https://openalex.org/W2028629022","https://openalex.org/W2042620520","https://openalex.org/W2050456292","https://openalex.org/W2082912027","https://openalex.org/W2105668062","https://openalex.org/W2108257090","https://openalex.org/W2108389384","https://openalex.org/W2114779636","https://openalex.org/W2127758174","https://openalex.org/W2134967712","https://openalex.org/W2148512505","https://openalex.org/W2150944048","https://openalex.org/W2162602080","https://openalex.org/W2183050958","https://openalex.org/W2202678121","https://openalex.org/W2573137292","https://openalex.org/W2578119541","https://openalex.org/W2608559058","https://openalex.org/W2781821160","https://openalex.org/W2887981960","https://openalex.org/W2892113269","https://openalex.org/W2893435209","https://openalex.org/W2902435351","https://openalex.org/W2902812092","https://openalex.org/W2922063386","https://openalex.org/W2932935282","https://openalex.org/W2951676304","https://openalex.org/W2971801381","https://openalex.org/W2974531988","https://openalex.org/W2985881898","https://openalex.org/W3000721979","https://openalex.org/W3008726875","https://openalex.org/W3094492244","https://openalex.org/W3098189759","https://openalex.org/W3140655290","https://openalex.org/W3162155458","https://openalex.org/W3168430821","https://openalex.org/W3209909976","https://openalex.org/W3215525389","https://openalex.org/W4210716706","https://openalex.org/W4220680219","https://openalex.org/W4282835253","https://openalex.org/W4283013935","https://openalex.org/W4289518623","https://openalex.org/W4310295249","https://openalex.org/W4311048978","https://openalex.org/W4377194479","https://openalex.org/W4383099422","https://openalex.org/W4390667515","https://openalex.org/W4392544734","https://openalex.org/W4393991916","https://openalex.org/W4396721167","https://openalex.org/W4401116262","https://openalex.org/W4402534001","https://openalex.org/W6853246683","https://openalex.org/W6860434022"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W4310018788","https://openalex.org/W4398796548","https://openalex.org/W2057846043","https://openalex.org/W2336040088","https://openalex.org/W2027065525","https://openalex.org/W2750247885","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2093426296"],"abstract_inverted_index":{"OpenDock":[0],"is":[1],"publicly":[2],"available":[3],"at:":[4],"https://github.com/guyuehuo/opendock.":[5]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
