{"id":"https://openalex.org/W4403512789","doi":"https://doi.org/10.1093/bioinformatics/btae623","title":"PhenoMultiOmics: an enzymatic reaction inferred multi-omics network visualization web server","display_name":"PhenoMultiOmics: an enzymatic reaction inferred multi-omics network visualization web server","publication_year":2024,"publication_date":"2024-10-16","ids":{"openalex":"https://openalex.org/W4403512789","doi":"https://doi.org/10.1093/bioinformatics/btae623","pmid":"https://pubmed.ncbi.nlm.nih.gov/39418180"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae623","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae623","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae623","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057980649","display_name":"Yuying Shi","orcid":"https://orcid.org/0000-0002-3048-7871"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210148850","display_name":"National Science Library","ror":"https://ror.org/04ndjyr10","country_code":"CN","type":"archive","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210148850"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuying Shi","raw_affiliation_strings":["Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University , Jinan 250012,","National Institute of Health Data Science of China, Shandong University , Jinan 250000,","National Science Library (Chengdu), Chinese Academy of Sciences , Chengdu 610299,","Chinese Academy of Sciences , , Chengdu 610299,","Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China","National Institute of Health Data Science of China, Shandong University, Jinan 250000, China","National Science Library (Chengdu), Chinese Academy of Sciences, Chengdu 610299, China","Shandong University , , Jinan 250000,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University , Jinan 250012,","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Institute of Health Data Science of China, Shandong University , Jinan 250000,","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Science Library (Chengdu), Chinese Academy of Sciences , Chengdu 610299,","institution_ids":["https://openalex.org/I4210148850"]},{"raw_affiliation_string":"Chinese Academy of Sciences , , Chengdu 610299,","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Institute of Health Data Science of China, Shandong University, Jinan 250000, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Science Library (Chengdu), Chinese Academy of Sciences, Chengdu 610299, China","institution_ids":["https://openalex.org/I4210148850"]},{"raw_affiliation_string":"Shandong University , , Jinan 250000,","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016048446","display_name":"Botao Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100830","display_name":"Shandong Tumor Hospital","ror":"https://ror.org/01413r497","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100830"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Botao Xu","raw_affiliation_strings":["Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science , Jinan 250000,","Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan 250000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science , Jinan 250000,","institution_ids":["https://openalex.org/I4210163399"]},{"raw_affiliation_string":"Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan 250000, China","institution_ids":["https://openalex.org/I4210100830","https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115593524","display_name":"Zhe Wang","orcid":"https://orcid.org/0000-0003-0786-9887"},"institutions":[{"id":"https://openalex.org/I4210100830","display_name":"Shandong Tumor Hospital","ror":"https://ror.org/01413r497","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100830"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Wang","raw_affiliation_strings":["Department of Radiation Oncology, Shandong Provincial Key Laboratory of Precision Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science , Jinan 250000,","Department of Radiation Oncology, Shandong Provincial Key Laboratory of Precision Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan 250000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Shandong Provincial Key Laboratory of Precision Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science , Jinan 250000,","institution_ids":["https://openalex.org/I4210163399"]},{"raw_affiliation_string":"Department of Radiation Oncology, Shandong Provincial Key Laboratory of Precision Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan 250000, China","institution_ids":["https://openalex.org/I4210100830","https://openalex.org/I4210163399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040886947","display_name":"Qitao Chen","orcid":"https://orcid.org/0009-0007-0326-924X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qitao Chen","raw_affiliation_strings":["Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University , Jinan 250012,","National Institute of Health Data Science of China, Shandong University , Jinan 250000,","Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China","National Institute of Health Data Science of China, Shandong University, Jinan 250000, China","Shandong University , , Jinan 250000,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University , Jinan 250012,","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Institute of Health Data Science of China, Shandong University , Jinan 250000,","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Institute of Health Data Science of China, Shandong University, Jinan 250000, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Shandong University , , Jinan 250000,","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101575964","display_name":"Jie Chai","orcid":"https://orcid.org/0000-0003-4029-6160"},"institutions":[{"id":"https://openalex.org/I4210100830","display_name":"Shandong Tumor Hospital","ror":"https://ror.org/01413r497","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100830"]},{"id":"https://openalex.org/I4210163399","display_name":"Shandong First Medical University","ror":"https://ror.org/05jb9pq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163399"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Chai","raw_affiliation_strings":["Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science , Jinan 250000,","Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan 250000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science , Jinan 250000,","institution_ids":["https://openalex.org/I4210163399"]},{"raw_affiliation_string":"Department of Gastrointestinal Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Science, Jinan 250000, China","institution_ids":["https://openalex.org/I4210100830","https://openalex.org/I4210163399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114860228","display_name":"Cheng Wang","orcid":"https://orcid.org/0000-0001-8135-4473"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Cheng Wang","raw_affiliation_strings":["Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University , Jinan 250012,","National Institute of Health Data Science of China, Shandong University , Jinan 250000,","Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China","National Institute of Health Data Science of China, Shandong University, Jinan 250000, China","Shandong University , , Jinan 250000,"],"raw_orcid":"https://orcid.org/0000-0001-8135-4473","affiliations":[{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University , Jinan 250012,","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Institute of Health Data Science of China, Shandong University , Jinan 250000,","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Cheeloo College of Medicine, Shandong University, Jinan 250012, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"National Institute of Health Data Science of China, Shandong University, Jinan 250000, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Shandong University , , Jinan 250000,","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101575964","https://openalex.org/A5114860228"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I4210100830","https://openalex.org/I4210163399"],"apc_list":{"value":4188,"currency":"USD","value_usd":4188},"apc_paid":{"value":4188,"currency":"USD","value_usd":4188},"fwci":0.4665,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.61760417,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"40","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8799999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8799999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.00860000029206276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.007600000128149986,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7261705994606018},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.664311945438385},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6623060703277588},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.4773542881011963},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4431937336921692},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41510283946990967},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3464735150337219},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3138490617275238},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22323116660118103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20134249329566956},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12063035368919373}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7261705994606018},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.664311945438385},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6623060703277588},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.4773542881011963},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4431937336921692},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41510283946990967},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3464735150337219},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3138490617275238},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22323116660118103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20134249329566956},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12063035368919373}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013274","descriptor_name":"Stomach Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013274","descriptor_name":"Stomach Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013274","descriptor_name":"Stomach Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013274","descriptor_name":"Stomach Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013274","descriptor_name":"Stomach Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013274","descriptor_name":"Stomach Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae623","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae623","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39418180","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39418180","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11549024","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11549024","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11549024/pdf/btae623.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae623","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae623","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3005386287","display_name":null,"funder_award_id":"ZR2022QB152","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G3338156154","display_name":null,"funder_award_id":"2021ZD0201808","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3508581768","display_name":null,"funder_award_id":"ZR2021MH108","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G42291393","display_name":null,"funder_award_id":"82304247","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6459663927","display_name":null,"funder_award_id":"21320082164070","funder_id":"https://openalex.org/F4320311026","funder_display_name":"Shandong University"}],"funders":[{"id":"https://openalex.org/F4320311026","display_name":"Shandong University","ror":"https://ror.org/0207yh398"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1959211997","https://openalex.org/W1966327575","https://openalex.org/W1973581425","https://openalex.org/W2035618305","https://openalex.org/W2048035978","https://openalex.org/W2076557851","https://openalex.org/W2093260830","https://openalex.org/W2096918186","https://openalex.org/W2100714130","https://openalex.org/W2109456553","https://openalex.org/W2127775495","https://openalex.org/W2144000913","https://openalex.org/W2146295849","https://openalex.org/W2146512944","https://openalex.org/W2157132849","https://openalex.org/W2326342707","https://openalex.org/W2591589437","https://openalex.org/W2623894525","https://openalex.org/W2807572295","https://openalex.org/W2884886432","https://openalex.org/W2952143471","https://openalex.org/W2953035315","https://openalex.org/W2967740517","https://openalex.org/W2968949140","https://openalex.org/W2981587619","https://openalex.org/W2983166786","https://openalex.org/W2990747402","https://openalex.org/W3002071299","https://openalex.org/W3013554928","https://openalex.org/W3025341310","https://openalex.org/W3112376646","https://openalex.org/W3120515035","https://openalex.org/W3121022319","https://openalex.org/W3135499953","https://openalex.org/W3146285609","https://openalex.org/W3163279211","https://openalex.org/W3181023185","https://openalex.org/W3183463549","https://openalex.org/W3183923959","https://openalex.org/W3195991557","https://openalex.org/W3211718555","https://openalex.org/W4200553809","https://openalex.org/W4223424723","https://openalex.org/W4282842922","https://openalex.org/W4282942945","https://openalex.org/W4297461078","https://openalex.org/W4303644985","https://openalex.org/W4387898458","https://openalex.org/W4388917508","https://openalex.org/W6753420036"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W177137871","https://openalex.org/W2141033859","https://openalex.org/W4292302930","https://openalex.org/W4386960635","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2081517010"],"abstract_inverted_index":{"MOTIVATION:":[0],"Enzymatic":[1],"reaction":[2],"play":[3],"a":[4,12,51,188],"pivotal":[5],"role":[6],"in":[7,31,49,124],"regulating":[8],"cellular":[9],"processes":[10],"with":[11,187],"high":[13],"degree":[14],"of":[15,54,81,99,156,163],"specificity":[16],"to":[17,36,77,115,126,151],"biological":[18,61],"functions.":[19],"When":[20],"enzymatic":[21,41,71,105,129,171],"reactions":[22,172],"are":[23],"disrupted":[24],"by":[25],"gene,":[26],"protein,":[27],"or":[28],"metabolite":[29],"dysfunctions":[30],"diseases,":[32],"it":[33],"becomes":[34],"crucial":[35],"visualize":[37],"the":[38,55,79,82,92,97,104,110,117,153,160,174],"resulting":[39],"perturbed":[40],"reaction-induced":[42],"multi-omics":[43,73,83,176],"network.":[44,177],"Multi-omics":[45],"network":[46,84,112],"visualization":[47,113],"aids":[48],"gaining":[50],"comprehensive":[52],"understanding":[53],"functionality":[56],"and":[57,122,143,159,173,190],"regulatory":[58],"mechanisms":[59],"within":[60],"systems.":[62],"RESULTS:":[63],"In":[64],"this":[65],"study,":[66],"we":[67],"designed":[68,76],"PhenoMultiOmics,":[69],"an":[70],"reaction-based":[72],"web":[74,192],"server":[75],"explore":[78],"scope":[80],"across":[85],"various":[86],"cancer":[87,158],"types.":[88],"We":[89,107],"first":[90],"curated":[91],"PhenoMultiOmics":[93,147,181],"database,":[94],"which":[95],"enables":[96],"retrieval":[98],"cancer-gene-protein-metabolite":[100],"relationships":[101],"based":[102],"on":[103],"reactions.":[106,130],"then":[108],"developed":[109],"MultiOmics":[111],"module":[114,134],"depict":[116],"interplay":[118],"between":[119],"genes,":[120],"proteins,":[121],"metabolites":[123],"response":[125],"specific":[127],"cancer-related":[128],"The":[131],"biomarker":[132],"discovery":[133],"facilitates":[135],"functional":[136],"analysis":[137],"through":[138],"differential":[139],"omic":[140],"feature":[141],"expression":[142],"pathway":[144],"enrichment":[145],"analysis.":[146],"has":[148],"been":[149],"applied":[150],"analyze":[152],"transcriptomics":[154],"data":[155,162],"gastric":[157],"metabolomics":[161],"lung":[164],"cancer,":[165],"providing":[166],"mechanistic":[167],"insights":[168],"into":[169],"interrupted":[170],"associated":[175],"AVAILABILITY":[178],"AND":[179],"IMPLEMENTATION:":[180],"is":[182],"freely":[183],"accessed":[184],"at":[185],"https://phenomultiomics.shinyapps.io/cancer/":[186],"user-friendly":[189],"interactive":[191],"interface.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
