{"id":"https://openalex.org/W4403455832","doi":"https://doi.org/10.1093/bioinformatics/btae616","title":"AncestryGrapher toolkit: Python command-line pipelines to visualize global- and local- ancestry inferences from the RFMIX version 2 software","display_name":"AncestryGrapher toolkit: Python command-line pipelines to visualize global- and local- ancestry inferences from the RFMIX version 2 software","publication_year":2024,"publication_date":"2024-10-16","ids":{"openalex":"https://openalex.org/W4403455832","doi":"https://doi.org/10.1093/bioinformatics/btae616","pmid":"https://pubmed.ncbi.nlm.nih.gov/39412440"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae616","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae616","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae616/59809586/btae616.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae616/59809586/btae616.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034244574","display_name":"Alessandro Lisi","orcid":null},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alessandro Lisi","raw_affiliation_strings":["Department of Biological Sciences (Human and Evolutionary Biology Section), University of Southern California , Los Angeles, CA 90089,"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences (Human and Evolutionary Biology Section), University of Southern California , Los Angeles, CA 90089,","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071166177","display_name":"Michael C. Campbell","orcid":"https://orcid.org/0000-0003-0749-3445"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael C Campbell","raw_affiliation_strings":["Department of Biological Sciences (Human and Evolutionary Biology Section), University of Southern California , Los Angeles, CA 90089,"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences (Human and Evolutionary Biology Section), University of Southern California , Los Angeles, CA 90089,","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034244574"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1561,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.88422566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"40","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13199","display_name":"Digestive system and related health","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13199","display_name":"Digestive system and related health","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8095925450325012},{"id":"https://openalex.org/keywords/genetic-genealogy","display_name":"Genetic genealogy","score":0.6730855107307434},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6091223359107971},{"id":"https://openalex.org/keywords/human-genetic-variation","display_name":"Human genetic variation","score":0.579099178314209},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4682052731513977},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4498719573020935},{"id":"https://openalex.org/keywords/genetic-variation","display_name":"Genetic variation","score":0.445713073015213},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.4390595257282257},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.43105459213256836},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42984533309936523},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.38269394636154175},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38232070207595825},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3797905147075653},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3614792227745056},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.36107057332992554},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3053770065307617},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21009892225265503},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.12144458293914795},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1192314624786377}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8095925450325012},{"id":"https://openalex.org/C75069973","wikidata":"https://www.wikidata.org/wiki/Q913584","display_name":"Genetic genealogy","level":3,"score":0.6730855107307434},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6091223359107971},{"id":"https://openalex.org/C40583040","wikidata":"https://www.wikidata.org/wiki/Q1502105","display_name":"Human genetic variation","level":5,"score":0.579099178314209},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4682052731513977},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4498719573020935},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.445713073015213},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.4390595257282257},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.43105459213256836},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42984533309936523},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.38269394636154175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38232070207595825},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3797905147075653},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3614792227745056},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.36107057332992554},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3053770065307617},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21009892225265503},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.12144458293914795},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1192314624786377},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae616","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae616","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae616/59809586/btae616.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39412440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39412440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11534077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11534077","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11534077/pdf/btae616.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae616","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae616","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae616/59809586/btae616.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3143584668","display_name":"Understanding the genomic basis and evolutionary history of lactase persistence, and the dynamics of the associated gut microbiome, in pastoralist populations","funder_award_id":"2221920","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8139964554","display_name":null,"funder_award_id":"SBE-BCS 2221920","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308668","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4403455832.pdf"},"referenced_works_count":86,"referenced_works":["https://openalex.org/W1741652825","https://openalex.org/W1965218239","https://openalex.org/W1969612599","https://openalex.org/W1979677919","https://openalex.org/W1995404520","https://openalex.org/W2001722477","https://openalex.org/W2022493413","https://openalex.org/W2045263764","https://openalex.org/W2051317473","https://openalex.org/W2051864455","https://openalex.org/W2059277852","https://openalex.org/W2064337222","https://openalex.org/W2064902628","https://openalex.org/W2080873675","https://openalex.org/W2082043949","https://openalex.org/W2083333719","https://openalex.org/W2083700716","https://openalex.org/W2096303238","https://openalex.org/W2096503903","https://openalex.org/W2096791516","https://openalex.org/W2098126593","https://openalex.org/W2100397860","https://openalex.org/W2102714321","https://openalex.org/W2102908193","https://openalex.org/W2106400350","https://openalex.org/W2112388098","https://openalex.org/W2113502134","https://openalex.org/W2113525376","https://openalex.org/W2118078855","https://openalex.org/W2119444539","https://openalex.org/W2127311716","https://openalex.org/W2128371599","https://openalex.org/W2134121494","https://openalex.org/W2135881136","https://openalex.org/W2138556224","https://openalex.org/W2140026462","https://openalex.org/W2141042406","https://openalex.org/W2143943357","https://openalex.org/W2150536115","https://openalex.org/W2151227169","https://openalex.org/W2154403877","https://openalex.org/W2154940281","https://openalex.org/W2156918287","https://openalex.org/W2158489424","https://openalex.org/W2165169151","https://openalex.org/W2169421412","https://openalex.org/W2171838950","https://openalex.org/W2174572513","https://openalex.org/W2227382309","https://openalex.org/W2233089496","https://openalex.org/W2259661493","https://openalex.org/W2311575653","https://openalex.org/W2523150673","https://openalex.org/W2531638431","https://openalex.org/W2791172779","https://openalex.org/W2794087945","https://openalex.org/W2915517055","https://openalex.org/W2949573820","https://openalex.org/W2950145222","https://openalex.org/W2950292414","https://openalex.org/W2952678685","https://openalex.org/W2977119348","https://openalex.org/W2993826846","https://openalex.org/W3011413344","https://openalex.org/W3014526310","https://openalex.org/W3082940740","https://openalex.org/W3129479801","https://openalex.org/W3133796649","https://openalex.org/W3137179349","https://openalex.org/W3154843529","https://openalex.org/W3200082820","https://openalex.org/W3200783382","https://openalex.org/W3200885656","https://openalex.org/W3202183387","https://openalex.org/W4284899723","https://openalex.org/W4285677475","https://openalex.org/W4308638143","https://openalex.org/W4311883692","https://openalex.org/W4313650295","https://openalex.org/W4320709834","https://openalex.org/W4367041194","https://openalex.org/W4367175094","https://openalex.org/W4379511242","https://openalex.org/W4396803528","https://openalex.org/W6678876156","https://openalex.org/W6728888335"],"related_works":["https://openalex.org/W4393302578","https://openalex.org/W2113129492","https://openalex.org/W2083390520","https://openalex.org/W2947636297","https://openalex.org/W2323327415","https://openalex.org/W2248612747","https://openalex.org/W4320495329","https://openalex.org/W133216809","https://openalex.org/W3096600795","https://openalex.org/W2119936645"],"abstract_inverted_index":{"The":[0],"AncestryGrapher":[1],"toolkit":[2],"is":[3],"free":[4],"and":[5],"open":[6],"source":[7],"on":[8],"https://github.com/alisi1989/RFmix2-Pipeline-to-plot.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
