{"id":"https://openalex.org/W4403143341","doi":"https://doi.org/10.1093/bioinformatics/btae576","title":"ABodyBuilder3: improved and scalable antibody structure predictions","display_name":"ABodyBuilder3: improved and scalable antibody structure predictions","publication_year":2024,"publication_date":"2024-10-01","ids":{"openalex":"https://openalex.org/W4403143341","doi":"https://doi.org/10.1093/bioinformatics/btae576","pmid":"https://pubmed.ncbi.nlm.nih.gov/39363504"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae576","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae576","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/10/btae576/59756434/btae576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/10/btae576/59756434/btae576.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029247834","display_name":"Henry Kenlay","orcid":"https://orcid.org/0000-0002-6741-2494"},"institutions":[{"id":"https://openalex.org/I4210095306","display_name":"Exscien (United States)","ror":"https://ror.org/00vxnww48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210095306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Henry Kenlay","raw_affiliation_strings":["Exscientia , Oxford OX4 4GE,"],"affiliations":[{"raw_affiliation_string":"Exscientia , Oxford OX4 4GE,","institution_ids":["https://openalex.org/I4210095306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016534522","display_name":"Fr\u00e9d\u00e9ric A. Dreyer","orcid":"https://orcid.org/0000-0002-0445-7863"},"institutions":[{"id":"https://openalex.org/I4210095306","display_name":"Exscien (United States)","ror":"https://ror.org/00vxnww48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210095306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric A Dreyer","raw_affiliation_strings":["Exscientia , Oxford OX4 4GE,"],"affiliations":[{"raw_affiliation_string":"Exscientia , Oxford OX4 4GE,","institution_ids":["https://openalex.org/I4210095306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011179877","display_name":"Daniel Cutting","orcid":"https://orcid.org/0000-0002-7395-7802"},"institutions":[{"id":"https://openalex.org/I4210095306","display_name":"Exscien (United States)","ror":"https://ror.org/00vxnww48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210095306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Cutting","raw_affiliation_strings":["Exscientia , Oxford OX4 4GE,"],"affiliations":[{"raw_affiliation_string":"Exscientia , Oxford OX4 4GE,","institution_ids":["https://openalex.org/I4210095306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055285728","display_name":"Daniel A. Nissley","orcid":"https://orcid.org/0000-0003-0550-9394"},"institutions":[{"id":"https://openalex.org/I4210095306","display_name":"Exscien (United States)","ror":"https://ror.org/00vxnww48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210095306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Nissley","raw_affiliation_strings":["Exscientia , Oxford OX4 4GE,"],"affiliations":[{"raw_affiliation_string":"Exscientia , Oxford OX4 4GE,","institution_ids":["https://openalex.org/I4210095306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015572211","display_name":"Charlotte M. Deane","orcid":"https://orcid.org/0000-0003-1388-2252"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210095306","display_name":"Exscien (United States)","ror":"https://ror.org/00vxnww48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210095306"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Charlotte M Deane","raw_affiliation_strings":["Department of Statistics, University of Oxford , Oxford OX1 3LB,","Exscientia , Oxford OX4 4GE,"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford , Oxford OX1 3LB,","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Exscientia , Oxford OX4 4GE,","institution_ids":["https://openalex.org/I4210095306"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5029247834"],"corresponding_institution_ids":["https://openalex.org/I4210095306"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":11.839,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.99070752,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"40","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10412","display_name":"Microfluidic and Capillary Electrophoresis Applications","score":0.9495999813079834,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.8220856785774231},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8162317276000977},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6229208707809448},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5418903827667236},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.500007152557373},{"id":"https://openalex.org/keywords/relaxation","display_name":"Relaxation (psychology)","score":0.46424564719200134},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4453156292438507},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41530752182006836},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40019527077674866},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3212150037288666},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.28123074769973755},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23850151896476746},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16351652145385742}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.8220856785774231},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8162317276000977},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6229208707809448},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5418903827667236},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.500007152557373},{"id":"https://openalex.org/C2776029896","wikidata":"https://www.wikidata.org/wiki/Q3935810","display_name":"Relaxation (psychology)","level":2,"score":0.46424564719200134},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4453156292438507},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41530752182006836},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40019527077674866},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3212150037288666},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.28123074769973755},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23850151896476746},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16351652145385742},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae576","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae576","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/10/btae576/59756434/btae576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39363504","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39363504","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11474105","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11474105","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11474105/pdf/btae576.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae576","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae576","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/10/btae576/59756434/btae576.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403143341.pdf","grobid_xml":"https://content.openalex.org/works/W4403143341.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W926901942","https://openalex.org/W1590219348","https://openalex.org/W1855237549","https://openalex.org/W1963514652","https://openalex.org/W2006431107","https://openalex.org/W2031132894","https://openalex.org/W2088510308","https://openalex.org/W2108627006","https://openalex.org/W2110505462","https://openalex.org/W2140673705","https://openalex.org/W2154135618","https://openalex.org/W2246074199","https://openalex.org/W2474661075","https://openalex.org/W2913847447","https://openalex.org/W2949223833","https://openalex.org/W2950118240","https://openalex.org/W2981124539","https://openalex.org/W2999958881","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3202105508","https://openalex.org/W3207204660","https://openalex.org/W4210520848","https://openalex.org/W4226108318","https://openalex.org/W4288089799","https://openalex.org/W4327550249","https://openalex.org/W4366998330","https://openalex.org/W4378364238","https://openalex.org/W4378714914","https://openalex.org/W4390661248","https://openalex.org/W4390897322","https://openalex.org/W4392236438","https://openalex.org/W4396895148","https://openalex.org/W6769627184"],"related_works":["https://openalex.org/W2100349471","https://openalex.org/W4389426664","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W3198565742","https://openalex.org/W2010064959","https://openalex.org/W2157390150","https://openalex.org/W2119742499","https://openalex.org/W1985266044"],"abstract_inverted_index":{"The":[0],"software":[1],"package":[2],"is":[3],"available":[4],"at":[5,12],"https://github.com/Exscientia/ABodyBuilder3":[6],"with":[7],"model":[8],"weights":[9],"and":[10],"data":[11],"https://zenodo.org/records/11354577.":[13]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
