{"id":"https://openalex.org/W4402585671","doi":"https://doi.org/10.1093/bioinformatics/btae562","title":"Dynamic category-sensitive hypergraph inferring and homo-heterogeneous neighbor feature learning for drug-related microbe prediction","display_name":"Dynamic category-sensitive hypergraph inferring and homo-heterogeneous neighbor feature learning for drug-related microbe prediction","publication_year":2024,"publication_date":"2024-09-01","ids":{"openalex":"https://openalex.org/W4402585671","doi":"https://doi.org/10.1093/bioinformatics/btae562","pmid":"https://pubmed.ncbi.nlm.nih.gov/39292557"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae562","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae562","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae562/59459858/btae562.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae562/59459858/btae562.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028616130","display_name":"Ping Xuan","orcid":"https://orcid.org/0000-0001-5328-691X"},"institutions":[{"id":"https://openalex.org/I32574673","display_name":"Shantou University","ror":"https://ror.org/01a099706","country_code":"CN","type":"education","lineage":["https://openalex.org/I32574673"]},{"id":"https://openalex.org/I39333907","display_name":"Yanshan University","ror":"https://ror.org/02txfnf15","country_code":"CN","type":"education","lineage":["https://openalex.org/I39333907"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Xuan","raw_affiliation_strings":["Department of Computer Science and Technology, Shantou University , Shantou 515063,","School of Information Science and Engineering, Yanshan University , Qinhuangdao 066004,","Shantou University Department of Computer Science and Technology, , Shantou, 515063, China","Yanshan University School of Information Science and Engineering, , Qinhuangdao, 066004, China"],"raw_orcid":"https://orcid.org/0000-0001-5328-691X","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Shantou University , Shantou 515063,","institution_ids":["https://openalex.org/I32574673"]},{"raw_affiliation_string":"School of Information Science and Engineering, Yanshan University , Qinhuangdao 066004,","institution_ids":["https://openalex.org/I39333907"]},{"raw_affiliation_string":"Shantou University Department of Computer Science and Technology, , Shantou, 515063, China","institution_ids":["https://openalex.org/I32574673"]},{"raw_affiliation_string":"Yanshan University School of Information Science and Engineering, , Qinhuangdao, 066004, China","institution_ids":["https://openalex.org/I39333907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040969371","display_name":"Zelong Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I39333907","display_name":"Yanshan University","ror":"https://ror.org/02txfnf15","country_code":"CN","type":"education","lineage":["https://openalex.org/I39333907"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zelong Xu","raw_affiliation_strings":["School of Information Science and Engineering, Yanshan University , Qinhuangdao 066004,","Yanshan University School of Information Science and Engineering, , Qinhuangdao, 066004, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yanshan University , Qinhuangdao 066004,","institution_ids":["https://openalex.org/I39333907"]},{"raw_affiliation_string":"Yanshan University School of Information Science and Engineering, , Qinhuangdao, 066004, China","institution_ids":["https://openalex.org/I39333907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004971220","display_name":"Hui Cui","orcid":"https://orcid.org/0000-0001-8224-4698"},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hui Cui","raw_affiliation_strings":["Australian Centre for AI in Medical Innovation, La Trobe University , Melbourne 3083,","Department of Computer Science and Information Technology, La Trobe University , Melbourne, VIC 3083,","La Trobe University Department of Computer Science and Information Technology, , Melbourne, 3083, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8224-4698","affiliations":[{"raw_affiliation_string":"Australian Centre for AI in Medical Innovation, La Trobe University , Melbourne 3083,","institution_ids":["https://openalex.org/I196829312"]},{"raw_affiliation_string":"Department of Computer Science and Information Technology, La Trobe University , Melbourne, VIC 3083,","institution_ids":["https://openalex.org/I196829312"]},{"raw_affiliation_string":"La Trobe University Department of Computer Science and Information Technology, , Melbourne, 3083, Australia","institution_ids":["https://openalex.org/I196829312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072908486","display_name":"Jing Gu","orcid":"https://orcid.org/0000-0002-0291-3263"},"institutions":[{"id":"https://openalex.org/I1300757298","display_name":"Heilongjiang University of Science and Technology","ror":"https://ror.org/030xwyx96","country_code":"CN","type":"education","lineage":["https://openalex.org/I1300757298"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Gu","raw_affiliation_strings":["School of Computer Science and Technology, Heilongjiang University , Harbin 150080,","Heilongjiang University School of Computer Science and Technology, , Harbin, 150080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Heilongjiang University , Harbin 150080,","institution_ids":["https://openalex.org/I1300757298"]},{"raw_affiliation_string":"Heilongjiang University School of Computer Science and Technology, , Harbin, 150080, China","institution_ids":["https://openalex.org/I1300757298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101660672","display_name":"Cheng Liu","orcid":"https://orcid.org/0000-0002-7204-7030"},"institutions":[{"id":"https://openalex.org/I32574673","display_name":"Shantou University","ror":"https://ror.org/01a099706","country_code":"CN","type":"education","lineage":["https://openalex.org/I32574673"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Liu","raw_affiliation_strings":["Department of Computer Science and Technology, Shantou University , Shantou 515063,","Shantou University Department of Computer Science and Technology, , Shantou, 515063, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Shantou University , Shantou 515063,","institution_ids":["https://openalex.org/I32574673"]},{"raw_affiliation_string":"Shantou University Department of Computer Science and Technology, , Shantou, 515063, China","institution_ids":["https://openalex.org/I32574673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004963500","display_name":"Tiangang Zhang","orcid":"https://orcid.org/0000-0002-7528-3581"},"institutions":[{"id":"https://openalex.org/I55022517","display_name":"Heilongjiang University","ror":"https://ror.org/04zyhq975","country_code":"CN","type":"education","lineage":["https://openalex.org/I55022517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tiangang Zhang","raw_affiliation_strings":["School of Mathematical Science, Heilongjiang University , Harbin 150080,","Heilongjiang University School of Mathematical Science, , Harbin, 150080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical Science, Heilongjiang University , Harbin 150080,","institution_ids":["https://openalex.org/I55022517"]},{"raw_affiliation_string":"Heilongjiang University School of Mathematical Science, , Harbin, 150080, China","institution_ids":["https://openalex.org/I55022517"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029620144","display_name":"Peiliang Wu","orcid":"https://orcid.org/0000-0003-1228-2757"},"institutions":[{"id":"https://openalex.org/I39333907","display_name":"Yanshan University","ror":"https://ror.org/02txfnf15","country_code":"CN","type":"education","lineage":["https://openalex.org/I39333907"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peiliang Wu","raw_affiliation_strings":["School of Information Science and Engineering, Yanshan University , Qinhuangdao 066004,","Yanshan University School of Information Science and Engineering, , Qinhuangdao, 066004, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yanshan University , Qinhuangdao 066004,","institution_ids":["https://openalex.org/I39333907"]},{"raw_affiliation_string":"Yanshan University School of Information Science and Engineering, , Qinhuangdao, 066004, China","institution_ids":["https://openalex.org/I39333907"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2247,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.79031917,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.17470000684261322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.17470000684261322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.16349999606609344,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.14000000059604645,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.7430968284606934},{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6523337364196777},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6408248543739319},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.542529821395874},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42533060908317566},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4195517897605896},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39356550574302673},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3422490060329437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24790102243423462},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1773417890071869},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11202847957611084}],"concepts":[{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.7430968284606934},{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6523337364196777},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6408248543739319},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.542529821395874},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42533060908317566},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4195517897605896},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39356550574302673},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3422490060329437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24790102243423462},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1773417890071869},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11202847957611084},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae562","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae562","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae562/59459858/btae562.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39292557","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39292557","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11441325","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11441325","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11441325/pdf/btae562.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae562","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae562","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae562/59459858/btae562.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1331161382","display_name":null,"funder_award_id":"U20A20167","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1484327127","display_name":null,"funder_award_id":"62276028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2393443127","display_name":null,"funder_award_id":"22567626H","funder_id":"https://openalex.org/F4320322163","funder_display_name":"Natural Science Foundation of Hebei Province"},{"id":"https://openalex.org/G4429004793","display_name":null,"funder_award_id":"62172143","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G453775460","display_name":null,"funder_award_id":"F202103079","funder_id":"https://openalex.org/F4320322163","funder_display_name":"Natural Science Foundation of Hebei Province"},{"id":"https://openalex.org/G4685021066","display_name":null,"funder_award_id":"62372282","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5304212652","display_name":null,"funder_award_id":"2024A1515010176","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G6259686466","display_name":null,"funder_award_id":"62172143","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6559325049","display_name":null,"funder_award_id":"LH2023F044","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null},{"id":"https://openalex.org/F4320322163","display_name":"Natural Science Foundation of Hebei Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4402585671.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1494052777","https://openalex.org/W1966716734","https://openalex.org/W2008054523","https://openalex.org/W2012606594","https://openalex.org/W2087007556","https://openalex.org/W2098715642","https://openalex.org/W2145336165","https://openalex.org/W2148067809","https://openalex.org/W2527665836","https://openalex.org/W2738837362","https://openalex.org/W2753550436","https://openalex.org/W2767891136","https://openalex.org/W2769934873","https://openalex.org/W2903096015","https://openalex.org/W2948160364","https://openalex.org/W2974069851","https://openalex.org/W2989263196","https://openalex.org/W3000095198","https://openalex.org/W3037489518","https://openalex.org/W3093996932","https://openalex.org/W3116604690","https://openalex.org/W3120550722","https://openalex.org/W3194560733","https://openalex.org/W3196385278","https://openalex.org/W3209603403","https://openalex.org/W4284704396","https://openalex.org/W4301600592","https://openalex.org/W4307847181","https://openalex.org/W4309467503","https://openalex.org/W4309859716","https://openalex.org/W4318539234","https://openalex.org/W4318982906","https://openalex.org/W4372352530","https://openalex.org/W4387409331","https://openalex.org/W4391212305","https://openalex.org/W4399369411","https://openalex.org/W6629750957"],"related_works":["https://openalex.org/W4376608589","https://openalex.org/W1537073411","https://openalex.org/W3138003926","https://openalex.org/W1630514295","https://openalex.org/W4300037846","https://openalex.org/W4288275998","https://openalex.org/W2963081352","https://openalex.org/W4376608938","https://openalex.org/W2472555608","https://openalex.org/W4386159726"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,215,250,264],"microbes":[2,45,98,165,301],"in":[3,10,219,296],"human":[4],"body":[5],"play":[6],"a":[7,81,116,125,146,191],"crucial":[8],"role":[9],"influencing":[11],"the":[12,20,39,58,62,92,101,109,136,174,220,237,268,298,303],"functions":[13],"of":[14,24,64,103,138,176,184,223,228,239,270],"drugs,":[15],"as":[16,167,169],"they":[17],"can":[18],"regulate":[19],"activities":[21],"and":[22,44,49,97,99,132,164,181,283,311],"toxicities":[23],"drugs.":[25,305],"Most":[26],"recent":[27],"methods":[28,52,73,259],"for":[29,162,209,260,302],"predicting":[30],"drug-microbe":[31,65,170,240,261],"associations":[32],"are":[33,46,314],"based":[34],"on":[35,288],"graph":[36,192,276],"learning.":[37,214],"However,":[38],"relationships":[40,93],"among":[41,94,128,245],"multiple":[42,95,129,246],"drugs":[43,96,163,290],"complex,":[47],"diverse,":[48],"heterogeneous.":[50],"Existing":[51],"often":[53],"fail":[54],"to":[55,90,152,200,206,235],"fully":[56],"model":[57],"relationships.":[59,156],"In":[60],"addition,":[61],"attributes":[63,102,140,238],"pairs":[66],"exhibit":[67],"long-distance":[68,111,243],"spatial":[69,233,284],"correlations,":[70],"which":[71,87],"previous":[72],"have":[74],"not":[75],"integrated":[76],"effectively.":[77],"RESULTS:":[78],"We":[79],"propose":[80],"new":[82],"prediction":[83],"method":[84,256],"named":[85],"DHDMP":[86],"is":[88],"designed":[89],"encode":[91,153,236],"integrate":[100],"various":[104],"neighbor":[105,211],"nodes":[106,131],"along":[107],"with":[108,118,195,279],"pairwise":[110,247],"correlations.":[112],"First,":[113],"we":[114,144,158,189,231],"construct":[115,159],"hypergraph":[117,149,273],"dynamic":[119],"topology,":[120],"where":[121],"each":[122,185],"hyperedge":[123],"represents":[124],"specific":[126],"relationship":[127],"drug":[130],"microbe":[133],"nodes.":[134],"Considering":[135],"heterogeneity":[137],"node":[139,147,202,271],"across":[141],"different":[142],"categories,":[143],"developed":[145],"category-sensitive":[148,272],"convolution":[150,274],"network":[151,194,278],"these":[154],"diverse":[155],"Second,":[157],"homogeneous":[160,180,205],"graphs":[161,208],"respectively,":[166],"well":[168],"heterogeneous":[171,182,207],"graph,":[172],"facilitating":[173],"integration":[175],"features":[177,203,224],"from":[178,204,225],"both":[179,226],"neighbors":[183],"target":[186],"node.":[187],"Third,":[188],"introduce":[190],"convolutional":[193,277],"cross-graph":[196,280],"feature":[197,212,281],"propagation":[198,216],"ability":[199],"transfer":[201],"enhanced":[210],"representation":[213],"strategy":[217],"aids":[218],"deep":[221],"fusion":[222],"types":[227],"neighbors.":[229],"Finally,":[230],"design":[232],"cross-attention":[234],"pairs,":[241],"revealing":[242],"correlations":[244],"attribute":[248],"patches.":[249],"comprehensive":[251],"comparison":[252],"experiments":[253],"showed":[254,292],"our":[255],"outperformed":[257],"state-of-the-art":[258],"association":[262],"prediction.":[263],"ablation":[265],"studies":[266,287],"demonstrated":[267],"effectiveness":[269],"network,":[275],"propagation,":[282],"cross-attention.":[285],"Case":[286],"three":[289],"further":[291],"DHDMP's":[293],"potential":[294],"application":[295],"discovering":[297],"reliable":[299],"candidate":[300],"interested":[304],"AVAILABILITY":[306],"AND":[307],"IMPLEMENTATION:":[308],"Source":[309],"codes":[310],"supplementary":[312],"materials":[313],"available":[315],"at":[316],"https://github.com/pingxuan-hlju/DHDMP.":[317]},"counts_by_year":[{"year":2025,"cited_by_count":6}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
