{"id":"https://openalex.org/W4402585620","doi":"https://doi.org/10.1093/bioinformatics/btae555","title":"AutoPeptideML: a study on how to build more trustworthy peptide bioactivity predictors","display_name":"AutoPeptideML: a study on how to build more trustworthy peptide bioactivity predictors","publication_year":2024,"publication_date":"2024-09-01","ids":{"openalex":"https://openalex.org/W4402585620","doi":"https://doi.org/10.1093/bioinformatics/btae555","pmid":"https://pubmed.ncbi.nlm.nih.gov/39292535"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae555","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae555","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092249392","display_name":"Ra\u00fal Fern\u00e1ndez-D\u00edaz","orcid":"https://orcid.org/0000-0002-7383-6568"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I4210100977","display_name":"IBM (Ireland)","ror":"https://ror.org/0146h2h75","country_code":"IE","type":"company","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210100977"]},{"id":"https://openalex.org/I4210133505","display_name":"Synthetic Genomics (United States)","ror":"https://ror.org/03mz6dw96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210133505"]},{"id":"https://openalex.org/I4210145784","display_name":"IBM Research - Ireland","ror":"https://ror.org/04jnxr720","country_code":"IE","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145784"]}],"countries":["IE","US"],"is_corresponding":true,"raw_author_name":"Ra\u00fal Fern\u00e1ndez-D\u00edaz","raw_affiliation_strings":["Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","IBM Research, Dublin , Dublin D15 HN66,","School of Medicine, University College Dublin , Dublin D04 C1P1,","The SFI Centre for Research Training in Genomics Data Science ,"],"affiliations":[{"raw_affiliation_string":"Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"IBM Research, Dublin , Dublin D15 HN66,","institution_ids":["https://openalex.org/I4210145784","https://openalex.org/I4210100977"]},{"raw_affiliation_string":"School of Medicine, University College Dublin , Dublin D04 C1P1,","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"The SFI Centre for Research Training in Genomics Data Science ,","institution_ids":["https://openalex.org/I4210133505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048938166","display_name":"Rodrigo Cossio-P\u00e9rez","orcid":"https://orcid.org/0000-0002-4407-7179"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]}],"countries":["AR","IE"],"is_corresponding":false,"raw_author_name":"Rodrigo Cossio-P\u00e9rez","raw_affiliation_strings":["Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","Department of Science and Technology, National University of Quilmes , Bernal B1876, Provincia de Buenos Aires,","School of Medicine, University College Dublin , Dublin D04 C1P1,"],"affiliations":[{"raw_affiliation_string":"Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Department of Science and Technology, National University of Quilmes , Bernal B1876, Provincia de Buenos Aires,","institution_ids":["https://openalex.org/I138504249"]},{"raw_affiliation_string":"School of Medicine, University College Dublin , Dublin D04 C1P1,","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070955314","display_name":"Clement Agoni","orcid":"https://orcid.org/0000-0001-6130-8031"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["IE","ZA"],"is_corresponding":false,"raw_author_name":"Clement Agoni","raw_affiliation_strings":["Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","Discipline of Pharmaceutical Sciences, School of Health Sciences, University of KwaZulu-Natal , Durban 4000,","School of Medicine, University College Dublin , Dublin D04 C1P1,"],"affiliations":[{"raw_affiliation_string":"Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"Discipline of Pharmaceutical Sciences, School of Health Sciences, University of KwaZulu-Natal , Durban 4000,","institution_ids":["https://openalex.org/I95023434"]},{"raw_affiliation_string":"School of Medicine, University College Dublin , Dublin D04 C1P1,","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027999872","display_name":"Hoang Thanh Lam","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100977","display_name":"IBM (Ireland)","ror":"https://ror.org/0146h2h75","country_code":"IE","type":"company","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210100977"]},{"id":"https://openalex.org/I4210145784","display_name":"IBM Research - Ireland","ror":"https://ror.org/04jnxr720","country_code":"IE","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145784"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Hoang Thanh Lam","raw_affiliation_strings":["IBM Research, Dublin , Dublin D15 HN66,"],"affiliations":[{"raw_affiliation_string":"IBM Research, Dublin , Dublin D15 HN66,","institution_ids":["https://openalex.org/I4210145784","https://openalex.org/I4210100977"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030268064","display_name":"Vanessa L\u00f3pez","orcid":"https://orcid.org/0000-0002-0674-5324"},"institutions":[{"id":"https://openalex.org/I4210100977","display_name":"IBM (Ireland)","ror":"https://ror.org/0146h2h75","country_code":"IE","type":"company","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210100977"]},{"id":"https://openalex.org/I4210145784","display_name":"IBM Research - Ireland","ror":"https://ror.org/04jnxr720","country_code":"IE","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145784"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Vanessa Lopez","raw_affiliation_strings":["IBM Research, Dublin , Dublin D15 HN66,"],"affiliations":[{"raw_affiliation_string":"IBM Research, Dublin , Dublin D15 HN66,","institution_ids":["https://openalex.org/I4210145784","https://openalex.org/I4210100977"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004065601","display_name":"Denis C. Shields","orcid":"https://orcid.org/0000-0003-4015-2474"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Denis C Shields","raw_affiliation_strings":["Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","School of Medicine, University College Dublin , Dublin D04 C1P1,"],"affiliations":[{"raw_affiliation_string":"Conway Institute of Biomolecular and Biomedical Science, University College Dublin , Dublin D04 C1P ,","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"School of Medicine, University College Dublin , Dublin D04 C1P1,","institution_ids":["https://openalex.org/I100930933"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5092249392"],"corresponding_institution_ids":["https://openalex.org/I100930933","https://openalex.org/I4210100977","https://openalex.org/I4210133505","https://openalex.org/I4210145784"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.281,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.88579451,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"40","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trustworthiness","display_name":"Trustworthiness","score":0.873039960861206},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6010048389434814},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.48638537526130676},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33268633484840393},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.252517431974411},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.25093141198158264},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18655875325202942},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.18525096774101257}],"concepts":[{"id":"https://openalex.org/C153701036","wikidata":"https://www.wikidata.org/wiki/Q659974","display_name":"Trustworthiness","level":2,"score":0.873039960861206},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6010048389434814},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.48638537526130676},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33268633484840393},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.252517431974411},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.25093141198158264},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18655875325202942},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18525096774101257}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae555","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39292535","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39292535","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11438549","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11438549","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11438549/pdf/btae555.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae555","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1974542962","display_name":null,"funder_award_id":"Sk\u0142odowska","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2689612763","display_name":null,"funder_award_id":"Marie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G296660250","display_name":null,"funder_award_id":"Marie Sk\u0142odowska","funder_id":"https://openalex.org/F4320320834","funder_display_name":"Enterprise Ireland"},{"id":"https://openalex.org/G3514550006","display_name":null,"funder_award_id":"Centre","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G453957581","display_name":null,"funder_award_id":"847402","funder_id":"https://openalex.org/F4320320834","funder_display_name":"Enterprise Ireland"},{"id":"https://openalex.org/G4915346836","display_name":null,"funder_award_id":"18/CRT/6","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G5395686418","display_name":"Career Development Fellowships in the National Technology Centre Programme","funder_award_id":"847402","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6885446146","display_name":null,"funder_award_id":"18/CRT/6214","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G8091316406","display_name":null,"funder_award_id":"778247","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320834","display_name":"Enterprise Ireland","ror":"https://ror.org/023z51242"},{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1863266496","https://openalex.org/W1969191557","https://openalex.org/W1973817400","https://openalex.org/W1997868832","https://openalex.org/W2054342685","https://openalex.org/W2076048958","https://openalex.org/W2077470670","https://openalex.org/W2094889474","https://openalex.org/W2905629607","https://openalex.org/W2913961829","https://openalex.org/W2949342052","https://openalex.org/W2950954328","https://openalex.org/W2951433247","https://openalex.org/W2966284335","https://openalex.org/W2971227267","https://openalex.org/W3020081556","https://openalex.org/W3036713553","https://openalex.org/W3047310964","https://openalex.org/W3048086963","https://openalex.org/W3048439402","https://openalex.org/W3084375074","https://openalex.org/W3111174583","https://openalex.org/W3112842176","https://openalex.org/W3119003488","https://openalex.org/W3126232929","https://openalex.org/W3127712659","https://openalex.org/W3145990216","https://openalex.org/W3164698295","https://openalex.org/W3164941572","https://openalex.org/W3177500196","https://openalex.org/W3186118520","https://openalex.org/W3189831819","https://openalex.org/W3197075585","https://openalex.org/W3203053846","https://openalex.org/W4200199004","https://openalex.org/W4212959738","https://openalex.org/W4220991280","https://openalex.org/W4226320060","https://openalex.org/W4286500588","https://openalex.org/W4292676375","https://openalex.org/W4294087001","https://openalex.org/W4307922460","https://openalex.org/W4308052938","https://openalex.org/W4321214126","https://openalex.org/W4327550249","https://openalex.org/W4362657509","https://openalex.org/W4385255463","https://openalex.org/W4387687322","https://openalex.org/W4388713388","https://openalex.org/W4391652655","https://openalex.org/W4396854777","https://openalex.org/W6639093311","https://openalex.org/W6759104856","https://openalex.org/W6763868836"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2076536433","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W90316445","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":{"Source":[0],"code,":[1],"documentation,":[2],"and":[3,9],"data":[4],"are":[5],"available":[6,29],"at":[7,13,30],"https://github.com/IBM/AutoPeptideML":[8],"a":[10],"dedicated":[11],"web-server":[12],"http://peptide.ucd.ie/AutoPeptideML.":[14],"A":[15],"static":[16],"version":[17],"of":[18,25],"the":[19,23,26],"software":[20],"to":[21],"ensure":[22],"reproduction":[24],"results":[27],"is":[28],"https://zenodo.org/records/13363975.":[31]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
