{"id":"https://openalex.org/W4402433547","doi":"https://doi.org/10.1093/bioinformatics/btae553","title":"BenchStab: a tool for automated querying of web-based stability predictors","display_name":"BenchStab: a tool for automated querying of web-based stability predictors","publication_year":2024,"publication_date":"2024-09-01","ids":{"openalex":"https://openalex.org/W4402433547","doi":"https://doi.org/10.1093/bioinformatics/btae553","pmid":"https://pubmed.ncbi.nlm.nih.gov/39259175"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae553","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae553","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058230979","display_name":"Jan Veleck\u00fd","orcid":"https://orcid.org/0000-0002-5316-6990"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Veleck\u00fd","raw_affiliation_strings":["Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-5316-6990","affiliations":[{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107153057","display_name":"Matej Berezn\u00fd","orcid":null},"institutions":[{"id":"https://openalex.org/I60587646","display_name":"Brno University of Technology","ror":"https://ror.org/03613d656","country_code":"CZ","type":"education","lineage":["https://openalex.org/I60587646"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Matej Berezn\u00fd","raw_affiliation_strings":["Department of Information Systems, Faculty of Information Technology, Brno University of Technology , 612 00 Brno, Czech Republic","Brno University of Technology Department of Information Systems, Faculty of Information Technology, , Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems, Faculty of Information Technology, Brno University of Technology , 612 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I60587646"]},{"raw_affiliation_string":"Brno University of Technology Department of Information Systems, Faculty of Information Technology, , Czech Republic","institution_ids":["https://openalex.org/I60587646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023686894","display_name":"Milo\u0161 Musil","orcid":"https://orcid.org/0000-0001-9373-7930"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210114565","display_name":"International Clinical Research Center, St. Anne's University Hospital Brno","ror":"https://ror.org/027v97282","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I60587646","display_name":"Brno University of Technology","ror":"https://ror.org/03613d656","country_code":"CZ","type":"education","lineage":["https://openalex.org/I60587646"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Milos Musil","raw_affiliation_strings":["Department of Information Systems, Faculty of Information Technology, Brno University of Technology , 612 00 Brno, Czech Republic","International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","Brno University of Technology Department of Information Systems, Faculty of Information Technology, , Czech Republic","Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","St. Anne's University Hospital International Clinical Research Centre, , Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems, Faculty of Information Technology, Brno University of Technology , 612 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I60587646"]},{"raw_affiliation_string":"International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Brno University of Technology Department of Information Systems, Faculty of Information Technology, , Czech Republic","institution_ids":["https://openalex.org/I60587646"]},{"raw_affiliation_string":"Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"St. Anne's University Hospital International Clinical Research Centre, , Brno, Czech Republic","institution_ids":["https://openalex.org/I4210136987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040585952","display_name":"Ji\u0159\u0131\u0301 Damborsk\u00fd","orcid":"https://orcid.org/0000-0002-7848-8216"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210114565","display_name":"International Clinical Research Center, St. Anne's University Hospital Brno","ror":"https://ror.org/027v97282","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jiri Damborsky","raw_affiliation_strings":["International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-7848-8216","affiliations":[{"raw_affiliation_string":"International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003693498","display_name":"David Bedn\u00e1\u0159","orcid":"https://orcid.org/0000-0002-6803-0340"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210114565","display_name":"International Clinical Research Center, St. Anne's University Hospital Brno","ror":"https://ror.org/027v97282","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"David Bednar","raw_affiliation_strings":["International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","St. Anne's University Hospital International Clinical Research Centre, , Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0002-6803-0340","affiliations":[{"raw_affiliation_string":"International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"St. Anne's University Hospital International Clinical Research Centre, , Brno, Czech Republic","institution_ids":["https://openalex.org/I4210136987"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042501458","display_name":"Stanislav Mazurenko","orcid":"https://orcid.org/0000-0003-3659-4819"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210102302","display_name":"University Hospital Brno","ror":"https://ror.org/00qq1fp34","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210102302"]},{"id":"https://openalex.org/I4210114565","display_name":"International Clinical Research Center, St. Anne's University Hospital Brno","ror":"https://ror.org/027v97282","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"id":"https://openalex.org/I4210136987","display_name":"St. Anne's University Hospital Brno","ror":"https://ror.org/049bjee35","country_code":"CZ","type":"healthcare","lineage":["https://openalex.org/I4210136987"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Stanislav Mazurenko","raw_affiliation_strings":["International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","St. Anne's University Hospital International Clinical Research Centre, , Brno, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0003-3659-4819","affiliations":[{"raw_affiliation_string":"International Clinical Research Centre, St. Anne\u2019s University Hospital , 656 91 Brno, Czech Republic","institution_ids":["https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"]},{"raw_affiliation_string":"Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University , 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, , Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"St. Anne's University Hospital International Clinical Research Centre, , Brno, Czech Republic","institution_ids":["https://openalex.org/I4210136987"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003693498","https://openalex.org/A5042501458"],"corresponding_institution_ids":["https://openalex.org/I21449261","https://openalex.org/I4210102302","https://openalex.org/I4210114565","https://openalex.org/I4210136987"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4816,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.6156516,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"40","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7652999758720398,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7652999758720398,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10934","display_name":"Heat shock proteins research","score":0.06159999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.013000000268220901,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.784636378288269},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5828291773796082},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5170786380767822},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.47899219393730164},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4404166340827942},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3651517629623413},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.32430773973464966},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3200155794620514},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1600484848022461}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.784636378288269},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5828291773796082},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5170786380767822},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.47899219393730164},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4404166340827942},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3651517629623413},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.32430773973464966},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3200155794620514},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1600484848022461}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btae553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae553","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39259175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39259175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dspace.vut.cz:11012/252347","is_oa":true,"landing_page_url":"http://hdl.handle.net/11012/252347","pdf_url":"https://dspace.vut.cz/bitstreams/feb0d185-89f3-4b57-a00f-75ffca4a4ce3/download","source":{"id":"https://openalex.org/S4306400317","display_name":"Brno University of Technology Digital Library (Brno University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60587646","host_organization_name":"Brno University of Technology","host_organization_lineage":["https://openalex.org/I60587646"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11427696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11427696","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11427696/pdf/btae553.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:https://dspace.vut.cz:11012/252347","is_oa":true,"landing_page_url":"https://hdl.handle.net/11012/252347","pdf_url":null,"source":{"id":"https://openalex.org/S4306400317","display_name":"Brno University of Technology Digital Library (Brno University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60587646","host_organization_name":"Brno University of Technology","host_organization_lineage":["https://openalex.org/I60587646"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae553","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1564040493","display_name":"RECETOX Research Infrastructure","funder_award_id":"LM2023069","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G1940663492","display_name":null,"funder_award_id":"LX22 NPO5107","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2020983025","display_name":null,"funder_award_id":"857560","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G2351268093","display_name":"CETOCOEN Excellence","funder_award_id":"857560","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G252385833","display_name":null,"funder_award_id":"LM2023069","funder_id":"https://openalex.org/F4320336687","funder_display_name":"RECETOX P\u0159\u00edrodov\u011bdeck\u00e9 Fakulty Masarykovy Univerzity"},{"id":"https://openalex.org/G300686824","display_name":null,"funder_award_id":"FIT-S-23-8209","funder_id":"https://openalex.org/F4320322748","funder_display_name":"Vysok\u00e9 U\u010den\u00ed Technick\u00e9 v Brn\u011b"},{"id":"https://openalex.org/G3604416084","display_name":"National institute for Neurological Research","funder_award_id":"LX22NPO5107","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G4178066241","display_name":"Czech National Infrastructure for Biological Data","funder_award_id":"LM2023055","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5470076797","display_name":"e-Infrastructure CZ","funder_award_id":"LM2018140","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G7545815938","display_name":null,"funder_award_id":"LM2018140","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8462350515","display_name":null,"funder_award_id":"LM2018140","funder_id":"https://openalex.org/F4320322748","funder_display_name":"Vysok\u00e9 U\u010den\u00ed Technick\u00e9 v Brn\u011b"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320322748","display_name":"Vysok\u00e9 U\u010den\u00ed Technick\u00e9 v Brn\u011b","ror":"https://ror.org/03613d656"},{"id":"https://openalex.org/F4320336687","display_name":"RECETOX P\u0159\u00edrodov\u011bdeck\u00e9 Fakulty Masarykovy Univerzity","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W46659105","https://openalex.org/W1985006546","https://openalex.org/W2013768168","https://openalex.org/W2023490488","https://openalex.org/W2066109307","https://openalex.org/W2097632784","https://openalex.org/W2102461176","https://openalex.org/W2120819598","https://openalex.org/W2121519777","https://openalex.org/W2149580316","https://openalex.org/W2262896633","https://openalex.org/W2307896283","https://openalex.org/W2428593791","https://openalex.org/W2551031656","https://openalex.org/W2799513065","https://openalex.org/W2900674118","https://openalex.org/W3022117139","https://openalex.org/W3045100294","https://openalex.org/W3048947632","https://openalex.org/W3098935468","https://openalex.org/W3104081477","https://openalex.org/W3124012008","https://openalex.org/W4200321201","https://openalex.org/W4206007286","https://openalex.org/W4309520320","https://openalex.org/W4384820649","https://openalex.org/W4388486442","https://openalex.org/W4400921915","https://openalex.org/W6602002561"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W868043274","https://openalex.org/W2513523087","https://openalex.org/W1187916458","https://openalex.org/W2373861055","https://openalex.org/W1559716973","https://openalex.org/W3109364360"],"abstract_inverted_index":{"SUMMARY:":[0],"Protein":[1],"design":[2],"requires":[3],"information":[4],"about":[5],"how":[6],"mutations":[7],"affect":[8],"protein":[9],"stability.":[10],"Many":[11],"web-based":[12],"predictors":[13,44],"are":[14],"available":[15,86,102],"for":[16,37],"this":[17],"purpose,":[18],"yet":[19],"comparing":[20],"them":[21,24],"or":[22],"using":[23],"en":[25],"masse":[26],"is":[27,56,81,101],"difficult.":[28],"Here,":[29],"we":[30],"present":[31],"BenchStab,":[32],"a":[33,49,90],"console":[34],"tool/Python":[35],"package":[36,85],"easy":[38],"and":[39,45,71,93],"quick":[40],"execution":[41],"of":[42,51],"19":[43],"result":[46],"collection":[47],"on":[48,103],"list":[50],"mutants.":[52],"Moreover,":[53],"the":[54,69],"tool":[55],"easily":[57],"extensible":[58],"with":[59,89],"additional":[60],"predictors.":[61],"We":[62],"created":[63],"an":[64,82],"independent":[65],"dataset":[66,100],"derived":[67],"from":[68],"FireProtDB":[70],"evaluated":[72],"24":[73],"different":[74],"prediction":[75],"methods.":[76],"AVAILABILITY":[77],"AND":[78],"IMPLEMENTATION:":[79],"BenchStab":[80,99],"open-source":[83],"Python":[84],"at":[87,96],"https://github.com/loschmidt/BenchStab":[88],"detailed":[91],"README":[92],"example":[94],"usage":[95],"https://loschmidt.chemi.muni.cz/benchstab.":[97],"The":[98],"Zenodo:":[104],"https://zenodo.org/records/10637728.":[105]},"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
