{"id":"https://openalex.org/W4402326519","doi":"https://doi.org/10.1093/bioinformatics/btae539","title":"CSV-Filter: a deep learning-based comprehensive structural variant filtering method for both short and long reads","display_name":"CSV-Filter: a deep learning-based comprehensive structural variant filtering method for both short and long reads","publication_year":2024,"publication_date":"2024-09-01","ids":{"openalex":"https://openalex.org/W4402326519","doi":"https://doi.org/10.1093/bioinformatics/btae539","pmid":"https://pubmed.ncbi.nlm.nih.gov/39240375"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae539","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae539","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Zeyu Xia","orcid":"https://orcid.org/0000-0002-2816-1805"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zeyu Xia","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090573416","display_name":"Weiming Xiang","orcid":"https://orcid.org/0000-0001-9065-8428"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiming Xiang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Hunan 410082,","Hunan University College of Computer Science and Electronic Engineering, , Lushan Road (S), Yuelu District, 410082, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Hunan 410082,","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I24407930"]},{"raw_affiliation_string":"Hunan University College of Computer Science and Electronic Engineering, , Lushan Road (S), Yuelu District, 410082, Hunan, P. R. China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110146534","display_name":"Qingzhe Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingzhe Wang","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075593243","display_name":"Xingze Li","orcid":null},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingze Li","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438814","display_name":"Yilin Li","orcid":"https://orcid.org/0000-0002-0029-1325"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yilin Li","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001848378","display_name":"Junyu Gao","orcid":"https://orcid.org/0000-0001-6000-8168"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyu Gao","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084996912","display_name":"Tao Tang","orcid":"https://orcid.org/0000-0002-9071-137X"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Tang","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078154211","display_name":"Canqun Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]},{"id":"https://openalex.org/I4210164952","display_name":"Tianjin haihe hospital","ror":"https://ror.org/05m762q77","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210164952"]},{"id":"https://openalex.org/I4210165734","display_name":"National Supercomputing Center of Tianjin","ror":"https://ror.org/05tngxm14","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210165734"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Canqun Yang","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","Haihe Lab of ITAI , Tianjin, 300457,","National Supercomputer Center in Tianjin , Tianjin, 300457,","National Supercomputer Center in Tianjin , No.10, Xinhuan West Rd, 300457, Tianjin, P. R. China","Haihe Lab of ITAI , West Middle Ring Expy and Binyu Ave Intersection Northwest, 300457, Tianjin, P. R. China","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"Haihe Lab of ITAI , Tianjin, 300457,","institution_ids":["https://openalex.org/I4210164952"]},{"raw_affiliation_string":"National Supercomputer Center in Tianjin , Tianjin, 300457,","institution_ids":["https://openalex.org/I4210165734"]},{"raw_affiliation_string":"National Supercomputer Center in Tianjin , No.10, Xinhuan West Rd, 300457, Tianjin, P. R. China","institution_ids":["https://openalex.org/I4210165734"]},{"raw_affiliation_string":"Haihe Lab of ITAI , West Middle Ring Expy and Binyu Ave Intersection Northwest, 300457, Tianjin, P. R. China","institution_ids":[]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010752019","display_name":"Yingbo Cui","orcid":"https://orcid.org/0000-0003-4000-4957"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingbo Cui","raw_affiliation_strings":["College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, National University of Defense Technology , Hunan 410073,","institution_ids":["https://openalex.org/I170215575"]},{"raw_affiliation_string":"National University of Defense Technology College of Computer Science and Technology, , Deya road No. 109, 410073, Hunan, P. R. China","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I170215575"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.6028,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.83372338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6767578125},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.6685671806335449},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5963000059127808},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5226754546165466},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42197442054748535},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.412738174200058},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.343616783618927},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3238539695739746},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.2411506175994873},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1596461534500122}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6767578125},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.6685671806335449},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5963000059127808},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5226754546165466},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42197442054748535},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.412738174200058},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.343616783618927},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3238539695739746},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.2411506175994873},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1596461534500122}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae539","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39240375","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39240375","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11419953","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11419953","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11419953/pdf/btae539.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae539","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4317978611","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321160","funder_display_name":"Sun Yat-sen University"},{"id":"https://openalex.org/G590285543","display_name":null,"funder_award_id":"62102427","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8740608253","display_name":null,"funder_award_id":"6210242","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321160","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71"},{"id":"https://openalex.org/F4320324150","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W2021341670","https://openalex.org/W2065817684","https://openalex.org/W2085755265","https://openalex.org/W2100684179","https://openalex.org/W2107126369","https://openalex.org/W2110171180","https://openalex.org/W2111350087","https://openalex.org/W2146005104","https://openalex.org/W2147733682","https://openalex.org/W2154397429","https://openalex.org/W2235737683","https://openalex.org/W2591909999","https://openalex.org/W2779975541","https://openalex.org/W2889664156","https://openalex.org/W2948024819","https://openalex.org/W2949294873","https://openalex.org/W2949884285","https://openalex.org/W2950121474","https://openalex.org/W2950833487","https://openalex.org/W2951764279","https://openalex.org/W2963665804","https://openalex.org/W3034581902","https://openalex.org/W3046401484","https://openalex.org/W3116380346","https://openalex.org/W3131055609","https://openalex.org/W3165023362","https://openalex.org/W3186118520","https://openalex.org/W4229082025","https://openalex.org/W4295896785","https://openalex.org/W4313250582","https://openalex.org/W4313430580","https://openalex.org/W4360612418","https://openalex.org/W4361224419","https://openalex.org/W4377940775"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W4230611425","https://openalex.org/W2731899572","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W2804383999","https://openalex.org/W4380075502"],"abstract_inverted_index":{"https://github.com/xzyschumacher/CSV-Filter.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
