{"id":"https://openalex.org/W4401793867","doi":"https://doi.org/10.1093/bioinformatics/btae513","title":"Disease gene prioritization with quantum walks","display_name":"Disease gene prioritization with quantum walks","publication_year":2024,"publication_date":"2024-08-01","ids":{"openalex":"https://openalex.org/W4401793867","doi":"https://doi.org/10.1093/bioinformatics/btae513","pmid":"https://pubmed.ncbi.nlm.nih.gov/39171848"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae513","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae513/58889834/btae513.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae513/58889834/btae513.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085878811","display_name":"Harto Saarinen","orcid":"https://orcid.org/0000-0002-5053-9990"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I16231767","display_name":"Turku University of Applied Sciences","ror":"https://ror.org/04s0yt949","country_code":"FI","type":"education","lineage":["https://openalex.org/I16231767"]},{"id":"https://openalex.org/I43695068","display_name":"Kemira (Finland)","ror":"https://ror.org/04qxks937","country_code":"FI","type":"company","lineage":["https://openalex.org/I43695068"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Harto Saarinen","raw_affiliation_strings":["Algorithmiq Ltd , FI-00160 Helsinki, Finland","Department of Mathematics and Statistics, Complex Systems Research Group, University of Turku , FI-20014, Turku, Finland","Algorithmiq Ltd, Kanavakatu 3, Helsinki, FI-00160, Finland","Complex Systems Research Group, University of Turku, Department of Mathematics and Statistics, Turku, FI - 20014, Finland"],"raw_orcid":"https://orcid.org/0000-0002-5053-9990","affiliations":[{"raw_affiliation_string":"Algorithmiq Ltd , FI-00160 Helsinki, Finland","institution_ids":["https://openalex.org/I43695068"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, Complex Systems Research Group, University of Turku , FI-20014, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I16231767"]},{"raw_affiliation_string":"Algorithmiq Ltd, Kanavakatu 3, Helsinki, FI-00160, Finland","institution_ids":[]},{"raw_affiliation_string":"Complex Systems Research Group, University of Turku, Department of Mathematics and Statistics, Turku, FI - 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021689661","display_name":"Mark A. Goldsmith","orcid":"https://orcid.org/0000-0001-8833-6841"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I16231767","display_name":"Turku University of Applied Sciences","ror":"https://ror.org/04s0yt949","country_code":"FI","type":"education","lineage":["https://openalex.org/I16231767"]},{"id":"https://openalex.org/I43695068","display_name":"Kemira (Finland)","ror":"https://ror.org/04qxks937","country_code":"FI","type":"company","lineage":["https://openalex.org/I43695068"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Mark Goldsmith","raw_affiliation_strings":["Algorithmiq Ltd , FI-00160 Helsinki, Finland","Department of Mathematics and Statistics, Complex Systems Research Group, University of Turku , FI-20014, Turku, Finland","Algorithmiq Ltd, Kanavakatu 3, Helsinki, FI-00160, Finland","Complex Systems Research Group, University of Turku, Department of Mathematics and Statistics, Turku, FI - 20014, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmiq Ltd , FI-00160 Helsinki, Finland","institution_ids":["https://openalex.org/I43695068"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, Complex Systems Research Group, University of Turku , FI-20014, Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I16231767"]},{"raw_affiliation_string":"Algorithmiq Ltd, Kanavakatu 3, Helsinki, FI-00160, Finland","institution_ids":[]},{"raw_affiliation_string":"Complex Systems Research Group, University of Turku, Department of Mathematics and Statistics, Turku, FI - 20014, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036627838","display_name":"Rui\u2010Sheng Wang","orcid":"https://orcid.org/0000-0003-4920-4357"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui-Sheng Wang","raw_affiliation_strings":["Department of Medicine, Brigham and Women\u2019s Hospital , Boston, MA 02115, United States","Department of Medicine, Brigham and Women's Hospital, Harvard Medical, Street, Boston, MA 02115, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Brigham and Women\u2019s Hospital , Boston, MA 02115, United States","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Department of Medicine, Brigham and Women's Hospital, Harvard Medical, Street, Boston, MA 02115, United States of America","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064479711","display_name":"Joseph Loscalzo","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Loscalzo","raw_affiliation_strings":["Department of Medicine, Brigham and Women\u2019s Hospital , Boston, MA 02115, United States","Department of Medicine, Brigham and Women's Hospital, Harvard Medical, Street, Boston, MA 02115, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Brigham and Women\u2019s Hospital , Boston, MA 02115, United States","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Department of Medicine, Brigham and Women's Hospital, Harvard Medical, Street, Boston, MA 02115, United States of America","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075923322","display_name":"Sabrina Maniscalco","orcid":"https://orcid.org/0000-0001-8559-0828"},"institutions":[{"id":"https://openalex.org/I43695068","display_name":"Kemira (Finland)","ror":"https://ror.org/04qxks937","country_code":"FI","type":"company","lineage":["https://openalex.org/I43695068"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sabrina Maniscalco","raw_affiliation_strings":["Algorithmiq Ltd , FI-00160 Helsinki, Finland","Algorithmiq Ltd, Kanavakatu 3, Helsinki, FI-00160, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmiq Ltd , FI-00160 Helsinki, Finland","institution_ids":["https://openalex.org/I43695068"]},{"raw_affiliation_string":"Algorithmiq Ltd, Kanavakatu 3, Helsinki, FI-00160, Finland","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021689661","https://openalex.org/A5085878811"],"corresponding_institution_ids":["https://openalex.org/I155660961","https://openalex.org/I16231767","https://openalex.org/I43695068"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.2173,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.88136131,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.38519999384880066,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.38519999384880066,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10682","display_name":"Quantum Computing Algorithms and Architecture","score":0.1590999960899353,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.04270000010728836,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.8141258358955383},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.6287636756896973},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6206193566322327},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5912190079689026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5760669112205505},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5289008021354675},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5216765403747559},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5076926946640015},{"id":"https://openalex.org/keywords/quantum-walk","display_name":"Quantum walk","score":0.4741332530975342},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3454168140888214},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3271130323410034},{"id":"https://openalex.org/keywords/quantum","display_name":"Quantum","score":0.3184102475643158},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19155973196029663},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.15690746903419495},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1322127878665924},{"id":"https://openalex.org/keywords/quantum-computer","display_name":"Quantum computer","score":0.1308293640613556},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.0650186836719513},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.060521483421325684},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.05728140473365784}],"concepts":[{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.8141258358955383},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.6287636756896973},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6206193566322327},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5912190079689026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5760669112205505},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5289008021354675},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5216765403747559},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5076926946640015},{"id":"https://openalex.org/C140058369","wikidata":"https://www.wikidata.org/wiki/Q7269113","display_name":"Quantum walk","level":4,"score":0.4741332530975342},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3454168140888214},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3271130323410034},{"id":"https://openalex.org/C84114770","wikidata":"https://www.wikidata.org/wiki/Q46344","display_name":"Quantum","level":2,"score":0.3184102475643158},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19155973196029663},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.15690746903419495},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1322127878665924},{"id":"https://openalex.org/C58053490","wikidata":"https://www.wikidata.org/wiki/Q176555","display_name":"Quantum computer","level":3,"score":0.1308293640613556},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0650186836719513},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.060521483421325684},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.05728140473365784},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003324","descriptor_name":"Coronary Artery Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae513","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae513/58889834/btae513.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39171848","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39171848","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11361815","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11361815","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11361815/pdf/btae513.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.utupub.fi:10024/185144","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/185144","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae513","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae513/58889834/btae513.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401793867.pdf","grobid_xml":"https://content.openalex.org/works/W4401793867.grobid-xml"},"referenced_works_count":74,"referenced_works":["https://openalex.org/W653833424","https://openalex.org/W1519689626","https://openalex.org/W1625061074","https://openalex.org/W1872062004","https://openalex.org/W1966092221","https://openalex.org/W1975528636","https://openalex.org/W1979104937","https://openalex.org/W1990093051","https://openalex.org/W1994917526","https://openalex.org/W1998067601","https://openalex.org/W2002437228","https://openalex.org/W2004855787","https://openalex.org/W2008620264","https://openalex.org/W2009405916","https://openalex.org/W2028212620","https://openalex.org/W2051674484","https://openalex.org/W2056782561","https://openalex.org/W2062533676","https://openalex.org/W2067305633","https://openalex.org/W2077767282","https://openalex.org/W2083045667","https://openalex.org/W2100582962","https://openalex.org/W2110553827","https://openalex.org/W2110684048","https://openalex.org/W2116531018","https://openalex.org/W2119006096","https://openalex.org/W2119220491","https://openalex.org/W2119412782","https://openalex.org/W2131161884","https://openalex.org/W2142597043","https://openalex.org/W2155581408","https://openalex.org/W2160185408","https://openalex.org/W2168708357","https://openalex.org/W2215009292","https://openalex.org/W2238851414","https://openalex.org/W2544284311","https://openalex.org/W2609242168","https://openalex.org/W2733047156","https://openalex.org/W2804501929","https://openalex.org/W2925754329","https://openalex.org/W2939387356","https://openalex.org/W2943556845","https://openalex.org/W2964198126","https://openalex.org/W2970549916","https://openalex.org/W2983166786","https://openalex.org/W2990908872","https://openalex.org/W3015964336","https://openalex.org/W3089313213","https://openalex.org/W3094694622","https://openalex.org/W3101222800","https://openalex.org/W3101805501","https://openalex.org/W3101890301","https://openalex.org/W3103093545","https://openalex.org/W3106006733","https://openalex.org/W3121786075","https://openalex.org/W3125898544","https://openalex.org/W3127536809","https://openalex.org/W3127734056","https://openalex.org/W3133710474","https://openalex.org/W3141934318","https://openalex.org/W3158434491","https://openalex.org/W3172563354","https://openalex.org/W4248234957","https://openalex.org/W4283835969","https://openalex.org/W4292229930","https://openalex.org/W4309306035","https://openalex.org/W4309469172","https://openalex.org/W4310639155","https://openalex.org/W4311346024","https://openalex.org/W4364378476","https://openalex.org/W4367298031","https://openalex.org/W4390707606","https://openalex.org/W6741091983","https://openalex.org/W6790382793"],"related_works":["https://openalex.org/W2506292322","https://openalex.org/W4221160056","https://openalex.org/W2035499096","https://openalex.org/W3015065480","https://openalex.org/W4283209547","https://openalex.org/W131888345","https://openalex.org/W1684851900","https://openalex.org/W2962981807","https://openalex.org/W3152705436","https://openalex.org/W4313401824"],"abstract_inverted_index":{"MOTIVATION:":[0],"Disease":[1],"gene":[2,75,108],"prioritization":[3,76,109],"methods":[4,45,59,110,168],"assign":[5],"scores":[6],"to":[7,12,33,53,64,105,122],"genes":[8,38,154],"or":[9,39],"proteins":[10,40],"according":[11],"their":[13],"likely":[14],"relevance":[15],"for":[16,41,73,155,166],"a":[17,22,70,87],"given":[18],"disease":[19,74,113],"based":[20,46,77],"on":[21,47,78,111],"provided":[23],"set":[24],"of":[25,86,96,135,151],"seed":[26],"genes.":[27],"This":[28],"scoring":[29],"can":[30,169],"be":[31,170],"used":[32],"find":[34],"new":[35,71],"biologically":[36],"relevant":[37],"many":[42],"diseases.":[43],"Although":[44],"classical":[48],"random":[49],"walks":[50,81],"have":[51,60],"proven":[52],"yield":[54],"competitive":[55],"results,":[56],"quantum":[57,80,99],"walk":[58,100],"not":[61],"been":[62],"explored":[63],"this":[65],"end.":[66],"RESULTS:":[67],"We":[68,92,141],"propose":[69],"algorithm":[72],"continuous-time":[79],"using":[82],"the":[83,94,131,152,167],"adjacency":[84],"matrix":[85],"protein-protein":[88],"interaction":[89],"(PPI)":[90],"network.":[91],"demonstrate":[93],"success":[95],"our":[97,144],"proposed":[98],"method":[101,145],"by":[102,146],"comparing":[103],"it":[104],"several":[106],"well-known":[107],"three":[112],"sets,":[114],"across":[115],"seven":[116],"different":[117],"PPI":[118],"networks.":[119],"In":[120],"order":[121],"compare":[123],"these":[124],"methods,":[125],"we":[126],"use":[127],"cross-validation":[128],"and":[129,137,164],"examine":[130],"mean":[132],"reciprocal":[133],"ranks":[134],"recall":[136],"average":[138],"precision":[139],"values.":[140],"further":[142],"validate":[143],"performing":[147],"an":[148],"enrichment":[149],"analysis":[150],"predicted":[153],"coronary":[156],"artery":[157],"disease.":[158],"AVAILABILITY":[159],"AND":[160],"IMPLEMENTATION:":[161],"The":[162],"data":[163],"code":[165],"accessed":[171],"at":[172],"https://github.com/markgolds/qdgp.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":7}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}