{"id":"https://openalex.org/W4401067262","doi":"https://doi.org/10.1093/bioinformatics/btae488","title":"PhysioFit: a software to quantify cell growth parameters and extracellular fluxes","display_name":"PhysioFit: a software to quantify cell growth parameters and extracellular fluxes","publication_year":2024,"publication_date":"2024-07-29","ids":{"openalex":"https://openalex.org/W4401067262","doi":"https://doi.org/10.1093/bioinformatics/btae488","pmid":"https://pubmed.ncbi.nlm.nih.gov/39073885"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae488","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae488","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/8/btae488/58749748/btae488.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/8/btae488/58749748/btae488.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5099039180","display_name":"Lo\u00efc Le Gr\u00e9gam","orcid":"https://orcid.org/0009-0008-1993-4918"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I196454796","display_name":"Institut National des Sciences Appliqu\u00e9es de Toulouse","ror":"https://ror.org/01h8pf755","country_code":"FR","type":"education","lineage":["https://openalex.org/I196454796","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Lo\u00efc Le Gr\u00e9gam","raw_affiliation_strings":["MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France"],"affiliations":[{"raw_affiliation_string":"MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","institution_ids":[]},{"raw_affiliation_string":"Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France","institution_ids":["https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045996056","display_name":"Yann Guitton","orcid":"https://orcid.org/0000-0002-4479-0636"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210092027","display_name":"Laboratoire D'\u00e9tude des R\u00e9sidus et Contaminants Dans les Aliments","ror":"https://ror.org/00kewvc41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210092027","https://openalex.org/I4210108720","https://openalex.org/I4210157468"]},{"id":"https://openalex.org/I4210157468","display_name":"Oniris","ror":"https://ror.org/05q0ncs32","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210157468"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yann Guitton","raw_affiliation_strings":["MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","Oniris, INRAE, LABERCA , Nantes, 44307, France"],"affiliations":[{"raw_affiliation_string":"MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","institution_ids":[]},{"raw_affiliation_string":"Oniris, INRAE, LABERCA , Nantes, 44307, France","institution_ids":["https://openalex.org/I4210157468","https://openalex.org/I4210088668","https://openalex.org/I4210092027"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070781456","display_name":"Floriant Bellvert","orcid":"https://orcid.org/0000-0002-3259-8655"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I196454796","display_name":"Institut National des Sciences Appliqu\u00e9es de Toulouse","ror":"https://ror.org/01h8pf755","country_code":"FR","type":"education","lineage":["https://openalex.org/I196454796","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Floriant Bellvert","raw_affiliation_strings":["MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France"],"affiliations":[{"raw_affiliation_string":"MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","institution_ids":[]},{"raw_affiliation_string":"Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France","institution_ids":["https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000112159","display_name":"St\u00e9phanie Heux","orcid":"https://orcid.org/0000-0003-1312-3002"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I196454796","display_name":"Institut National des Sciences Appliqu\u00e9es de Toulouse","ror":"https://ror.org/01h8pf755","country_code":"FR","type":"education","lineage":["https://openalex.org/I196454796","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phanie Heux","raw_affiliation_strings":["Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France"],"affiliations":[{"raw_affiliation_string":"Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France","institution_ids":["https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008100854","display_name":"Fabien Jourdan","orcid":"https://orcid.org/0000-0001-9401-2894"},"institutions":[{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210100066","display_name":"Toxalim Research Centre in Food Toxicology","ror":"https://ror.org/0111a5077","country_code":"FR","type":"facility","lineage":["https://openalex.org/I134560555","https://openalex.org/I4210088668","https://openalex.org/I4210100066","https://openalex.org/I4210121065","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabien Jourdan","raw_affiliation_strings":["MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS , Toulouse, 31027, France"],"affiliations":[{"raw_affiliation_string":"MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","institution_ids":[]},{"raw_affiliation_string":"Toxalim (Research Centre in Food Toxicology), Universit\u00e9 de Toulouse, INRAE, ENVT, INP-Purpan, UPS , Toulouse, 31027, France","institution_ids":["https://openalex.org/I4210100066","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I176063091","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070865060","display_name":"Jean\u2010Charles Portais","orcid":"https://orcid.org/0000-0002-3480-0933"},"institutions":[{"id":"https://openalex.org/I196454796","display_name":"Institut National des Sciences Appliqu\u00e9es de Toulouse","ror":"https://ror.org/01h8pf755","country_code":"FR","type":"education","lineage":["https://openalex.org/I196454796","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Charles Portais","raw_affiliation_strings":["MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","RESTORE (Geroscience & Rejuvenation Center), Universit\u00e9 de Toulouse, INSERM, CNRS, EFS , Toulouse, 31100, France","Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France"],"affiliations":[{"raw_affiliation_string":"MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","institution_ids":[]},{"raw_affiliation_string":"RESTORE (Geroscience & Rejuvenation Center), Universit\u00e9 de Toulouse, INSERM, CNRS, EFS , Toulouse, 31100, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I17866349","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France","institution_ids":["https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077889864","display_name":"Pierre Millard","orcid":"https://orcid.org/0000-0002-8136-9963"},"institutions":[{"id":"https://openalex.org/I196454796","display_name":"Institut National des Sciences Appliqu\u00e9es de Toulouse","ror":"https://ror.org/01h8pf755","country_code":"FR","type":"education","lineage":["https://openalex.org/I196454796","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Millard","raw_affiliation_strings":["MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France"],"affiliations":[{"raw_affiliation_string":"MetaToul-MetaboHUB, National Infrastructure of Metabolomics and Fluxomics , Toulouse, 31077, France","institution_ids":[]},{"raw_affiliation_string":"Toulouse Biotechnology Institute, Universit\u00e9 de Toulouse, CNRS, INRAE, INSA , Toulouse, 31077, France","institution_ids":["https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5099039180"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I17866349","https://openalex.org/I196454796","https://openalex.org/I4210088668"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7142,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.6995278,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"40","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8524813652038574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7215327024459839},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.628160834312439},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5981029272079468},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.5905045866966248},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5814539194107056},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5538920164108276},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5470207929611206},{"id":"https://openalex.org/keywords/extracellular","display_name":"Extracellular","score":0.5309723615646362},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4701053500175476},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4147254526615143},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.39936572313308716},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.31021952629089355},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18697941303253174}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8524813652038574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7215327024459839},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.628160834312439},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5981029272079468},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.5905045866966248},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5814539194107056},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5538920164108276},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5470207929611206},{"id":"https://openalex.org/C28406088","wikidata":"https://www.wikidata.org/wiki/Q5571762","display_name":"Extracellular","level":2,"score":0.5309723615646362},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4701053500175476},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4147254526615143},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.39936572313308716},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.31021952629089355},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18697941303253174},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae488","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae488","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/8/btae488/58749748/btae488.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39073885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39073885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11303505","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11303505","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11303505/pdf/btae488.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae488","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae488","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/8/btae488/58749748/btae488.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5099999904632568,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3635184277","display_name":null,"funder_award_id":"11-INBS-0010","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5802621812","display_name":null,"funder_award_id":"ANR-11-INBS","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8180977231","display_name":null,"funder_award_id":"MetaboHUB-ANR-11-INBS-0010","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8907031238","display_name":null,"funder_award_id":"ANR-11-INBS-0010","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320331560","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401067262.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1595159159","https://openalex.org/W1988458243","https://openalex.org/W1991074194","https://openalex.org/W2000359198","https://openalex.org/W2055666272","https://openalex.org/W2131842864","https://openalex.org/W2148097176","https://openalex.org/W2149309843","https://openalex.org/W2956863447","https://openalex.org/W2962768968","https://openalex.org/W3048369682","https://openalex.org/W3120468872","https://openalex.org/W3158833663","https://openalex.org/W4380290576"],"related_works":["https://openalex.org/W2132241624","https://openalex.org/W3034716491","https://openalex.org/W4392173297","https://openalex.org/W4311683883","https://openalex.org/W4240625990","https://openalex.org/W4212902261","https://openalex.org/W4400311305","https://openalex.org/W4221030787","https://openalex.org/W2790811106","https://openalex.org/W2789551765"],"abstract_inverted_index":{"PhysioFit":[0],"v3":[1],"is":[2],"implemented":[3],"in":[4],"Python":[5],"3":[6],"and":[7,13,19,30],"was":[8],"tested":[9],"on":[10],"Windows,":[11],"Unix,":[12],"MacOS":[14],"platforms.":[15],"The":[16],"source":[17],"code":[18],"the":[20],"documentation":[21],"are":[22],"freely":[23],"distributed":[24],"under":[25],"GPL3":[26],"license":[27],"at":[28],"https://github.com/MetaSys-LISBP/PhysioFit/":[29],"https://physiofit.readthedocs.io/.":[31]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-21T08:13:44.787528","created_date":"2025-10-10T00:00:00"}
