{"id":"https://openalex.org/W4401103154","doi":"https://doi.org/10.1093/bioinformatics/btae473","title":"MuCoCP: a priori chemical knowledge-based multimodal contrastive learning pre-trained neural network for the prediction of cyclic peptide membrane penetration ability","display_name":"MuCoCP: a priori chemical knowledge-based multimodal contrastive learning pre-trained neural network for the prediction of cyclic peptide membrane penetration ability","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4401103154","doi":"https://doi.org/10.1093/bioinformatics/btae473","pmid":"https://pubmed.ncbi.nlm.nih.gov/39067027"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae473","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae473","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae473/58667438/btae473.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae473/58667438/btae473.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102820274","display_name":"Yunxiang Yu","orcid":"https://orcid.org/0009-0008-4149-1412"},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunxiang Yu","raw_affiliation_strings":["School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113371879","display_name":"Mengyun Gu","orcid":null},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyun Gu","raw_affiliation_strings":["School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112842700","display_name":"Hai Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124531","display_name":"Lanzhou University Second Hospital","ror":"https://ror.org/02erhaz63","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210124531"]},{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai Guo","raw_affiliation_strings":["The Second Hospital Clinical Medical School, Lanzhou University , Lanzhou, 730000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Second Hospital Clinical Medical School, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I4210124531","https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102670727","display_name":"Yabo Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yabo Deng","raw_affiliation_strings":["School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067431943","display_name":"Danna Chen","orcid":"https://orcid.org/0000-0002-8179-7888"},"institutions":[{"id":"https://openalex.org/I176834541","display_name":"Guangdong Medical College","ror":"https://ror.org/04k5rxe29","country_code":"CN","type":"education","lineage":["https://openalex.org/I176834541"]},{"id":"https://openalex.org/I4210116575","display_name":"Guangzhou First People's Hospital","ror":"https://ror.org/02bwytq13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210116575"]},{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]},{"id":"https://openalex.org/I92039509","display_name":"Guangzhou Medical University","ror":"https://ror.org/00zat6v61","country_code":"CN","type":"education","lineage":["https://openalex.org/I92039509"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danna Chen","raw_affiliation_strings":["Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China","School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","The Affiliated Hospital of Guangdong Medical University , Zhanjiang, 524000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China","institution_ids":["https://openalex.org/I4210116575","https://openalex.org/I90610280","https://openalex.org/I92039509"]},{"raw_affiliation_string":"School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I76214153"]},{"raw_affiliation_string":"The Affiliated Hospital of Guangdong Medical University , Zhanjiang, 524000, China","institution_ids":["https://openalex.org/I176834541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100424787","display_name":"Jianwei Wang","orcid":"https://orcid.org/0000-0002-2521-4254"},"institutions":[{"id":"https://openalex.org/I4210116575","display_name":"Guangzhou First People's Hospital","ror":"https://ror.org/02bwytq13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210116575"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]},{"id":"https://openalex.org/I92039509","display_name":"Guangzhou Medical University","ror":"https://ror.org/00zat6v61","country_code":"CN","type":"education","lineage":["https://openalex.org/I92039509"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianwei Wang","raw_affiliation_strings":["Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China","institution_ids":["https://openalex.org/I4210116575","https://openalex.org/I90610280","https://openalex.org/I92039509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100412534","display_name":"Caixia Wang","orcid":"https://orcid.org/0009-0003-5422-8764"},"institutions":[{"id":"https://openalex.org/I4210116575","display_name":"Guangzhou First People's Hospital","ror":"https://ror.org/02bwytq13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210116575"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]},{"id":"https://openalex.org/I92039509","display_name":"Guangzhou Medical University","ror":"https://ror.org/00zat6v61","country_code":"CN","type":"education","lineage":["https://openalex.org/I92039509"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Caixia Wang","raw_affiliation_strings":["Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China","institution_ids":["https://openalex.org/I4210116575","https://openalex.org/I90610280","https://openalex.org/I92039509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100778439","display_name":"Xia Liu","orcid":"https://orcid.org/0000-0001-7190-5032"},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Liu","raw_affiliation_strings":["School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017733696","display_name":"Wenjin Yan","orcid":"https://orcid.org/0000-0003-2566-7322"},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenjin Yan","raw_affiliation_strings":["School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China"],"raw_orcid":"https://orcid.org/0000-0003-2566-7322","affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051161255","display_name":"Jinqi Huang","orcid":"https://orcid.org/0000-0002-5961-6841"},"institutions":[{"id":"https://openalex.org/I176834541","display_name":"Guangdong Medical College","ror":"https://ror.org/04k5rxe29","country_code":"CN","type":"education","lineage":["https://openalex.org/I176834541"]},{"id":"https://openalex.org/I4210116575","display_name":"Guangzhou First People's Hospital","ror":"https://ror.org/02bwytq13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210116575"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]},{"id":"https://openalex.org/I92039509","display_name":"Guangzhou Medical University","ror":"https://ror.org/00zat6v61","country_code":"CN","type":"education","lineage":["https://openalex.org/I92039509"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jinqi Huang","raw_affiliation_strings":["Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China","The Affiliated Hospital of Guangdong Medical University , Zhanjiang, 524000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou First People\u2019s Hospital, South China University of Technology , Guangzhou, 510180, China","institution_ids":["https://openalex.org/I4210116575","https://openalex.org/I90610280","https://openalex.org/I92039509"]},{"raw_affiliation_string":"The Affiliated Hospital of Guangdong Medical University , Zhanjiang, 524000, China","institution_ids":["https://openalex.org/I176834541"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017733696","https://openalex.org/A5051161255","https://openalex.org/A5100778439"],"corresponding_institution_ids":["https://openalex.org/I176834541","https://openalex.org/I4210116575","https://openalex.org/I76214153","https://openalex.org/I90610280","https://openalex.org/I92039509"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3171,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.79519181,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"40","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5472000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5472000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.27070000767707825,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.09860000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.803540050983429},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6622220277786255},{"id":"https://openalex.org/keywords/cyclic-peptide","display_name":"Cyclic peptide","score":0.6439669132232666},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6246021389961243},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6082403063774109},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5189468860626221},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.3550204932689667},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.15013673901557922}],"concepts":[{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.803540050983429},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6622220277786255},{"id":"https://openalex.org/C60984968","wikidata":"https://www.wikidata.org/wiki/Q389172","display_name":"Cyclic peptide","level":3,"score":0.6439669132232666},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6246021389961243},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6082403063774109},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5189468860626221},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.3550204932689667},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.15013673901557922},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002463","descriptor_name":"Cell Membrane Permeability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010456","descriptor_name":"Peptides, Cyclic","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae473","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae473","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae473/58667438/btae473.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39067027","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39067027","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11315609","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11315609","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11315609/pdf/btae473.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae473","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae473","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae473/58667438/btae473.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.7400000095367432,"display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G5389717461","display_name":null,"funder_award_id":"2022A1515220122","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G5618652042","display_name":null,"funder_award_id":"22JR5RA508","funder_id":"https://openalex.org/F4320322880","funder_display_name":"Natural Science Foundation of Gansu Province"},{"id":"https://openalex.org/G8977481958","display_name":null,"funder_award_id":"82270143","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320313889","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322880","display_name":"Natural Science Foundation of Gansu Province","ror":null},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401103154.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2279263454","https://openalex.org/W2617541455","https://openalex.org/W2796024961","https://openalex.org/W2884031225","https://openalex.org/W2945543430","https://openalex.org/W2963919246","https://openalex.org/W2968934579","https://openalex.org/W2982331182","https://openalex.org/W3007759740","https://openalex.org/W3011574394","https://openalex.org/W3082499071","https://openalex.org/W3088409176","https://openalex.org/W3164109502","https://openalex.org/W3186629373","https://openalex.org/W3190906682","https://openalex.org/W3198659451","https://openalex.org/W3212051308","https://openalex.org/W4214943162","https://openalex.org/W4221091412","https://openalex.org/W4283024559","https://openalex.org/W4285095102","https://openalex.org/W4293461777","https://openalex.org/W4312113926","https://openalex.org/W4321227311","https://openalex.org/W4327694659","https://openalex.org/W4379929801","https://openalex.org/W4388845139","https://openalex.org/W4391231361"],"related_works":["https://openalex.org/W4388311650","https://openalex.org/W2589939877","https://openalex.org/W2081553665","https://openalex.org/W2892113376","https://openalex.org/W2030585732","https://openalex.org/W3012180934","https://openalex.org/W2078683866","https://openalex.org/W2063421454","https://openalex.org/W2088029223","https://openalex.org/W3209239669"],"abstract_inverted_index":{"MOTIVATION:":[0],"There":[1],"has":[2,167],"been":[3],"a":[4,46,56,87,94,156,204],"burgeoning":[5],"interest":[6],"in":[7,230],"cyclic":[8,65,74,128,190,213,221],"peptide":[9,75,214,222],"therapeutics":[10],"due":[11],"to":[12,30,36,54,71,104],"their":[13,38],"various":[14,78],"outstanding":[15],"advantages":[16],"and":[17,28,49,98,136,145,151,174,192,216],"strong":[18],"potential":[19,62],"for":[20,60,206],"drug":[21],"formation.":[22],"However,":[23],"it":[24],"is":[25,45],"undoubtedly":[26],"costly":[27],"inefficient":[29],"use":[31,86],"traditional":[32],"wet":[33],"lab":[34],"methods":[35],"clarify":[37],"biological":[39],"activities.":[40],"Using":[41],"artificial":[42],"intelligence":[43],"instead":[44],"more":[47],"energy-efficient":[48],"faster":[50],"approach.":[51],"MuCoCP":[52,182],"aims":[53],"build":[55],"complete":[57],"pre-trained":[58],"model":[59,157],"extracting":[61],"features":[63],"of":[64,110,118,127,134,138,149,153,177,189,212,220],"peptides,":[66],"which":[67,130,170,200],"can":[68,183,234],"be":[69,235],"fine-tuned":[70],"accurately":[72],"predict":[73],"bioactivity":[76,198],"on":[77,93,124,140,161,196],"downstream":[79,197],"tasks.":[80],"To":[81,114],"maximize":[82],"its":[83],"effectiveness,":[84],"we":[85,121],"novel":[88],"data":[89],"augmentation":[90],"method":[91,233],"based":[92],"priori":[95],"chemical":[96],"knowledge":[97],"multiple":[99],"unsupervised":[100],"training":[101,144],"objective":[102],"functions":[103],"greatly":[105],"improve":[106],"the":[107,111,116,119,125,172,186,207,218],"information-grabbing":[108],"ability":[109],"model.":[112],"RESULTS:":[113],"assay":[115],"efficacy":[117],"model,":[120],"conducted":[122],"validation":[123],"membrane-permeability":[126],"peptides":[129,191],"achieved":[131,168],"an":[132,147,162],"accuracy":[133,148],"0.87":[135],"R-squared":[137,152],"0.503":[139],"CycPeptMPDB":[141],"using":[142,155],"semi-supervised":[143],"obtained":[146],"0.84":[150],"0.384":[154],"with":[158],"frozen":[159],"parameters":[160],"external":[163],"dataset.":[164],"This":[165],"result":[166],"state-of-the-art,":[169],"substantiates":[171],"stability":[173],"generalization":[175],"capability":[176],"MuCoCP.":[178],"It":[179],"means":[180],"that":[181],"fully":[184],"explore":[185],"high-dimensional":[187],"information":[188],"make":[193],"accurate":[194],"predictions":[195],"tasks,":[199],"will":[201],"serve":[202],"as":[203],"guide":[205],"future":[208],"de":[209],"novo":[210],"design":[211],"drugs":[215],"promote":[217],"development":[219],"drugs.":[223],"AVAILABILITY":[224],"AND":[225],"IMPLEMENTATION:":[226],"All":[227],"code":[228],"used":[229],"our":[231],"proposed":[232],"found":[236],"at":[237],"https://github.com/lennonyu11234/MuCoCP.":[238]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
