{"id":"https://openalex.org/W4400800911","doi":"https://doi.org/10.1093/bioinformatics/btae455","title":"q2-metnet: QIIME2 package to analyse 16S rRNA data via high-quality metabolic reconstructions of the human gut microbiota","display_name":"q2-metnet: QIIME2 package to analyse 16S rRNA data via high-quality metabolic reconstructions of the human gut microbiota","publication_year":2024,"publication_date":"2024-07-16","ids":{"openalex":"https://openalex.org/W4400800911","doi":"https://doi.org/10.1093/bioinformatics/btae455","pmid":"https://pubmed.ncbi.nlm.nih.gov/39018187"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae455","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae455/58575887/btae455.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae455/58575887/btae455.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067155110","display_name":"Francesco Balzerani","orcid":"https://orcid.org/0000-0002-5608-5766"},"institutions":[{"id":"https://openalex.org/I4210113430","display_name":"Tecnalia","ror":"https://ror.org/02fv8hj62","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210113430"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Francesco Balzerani","raw_affiliation_strings":["Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain"],"affiliations":[{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","institution_ids":["https://openalex.org/I4210113430"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059311338","display_name":"Telmo Blasco","orcid":"https://orcid.org/0000-0001-7819-8668"},"institutions":[{"id":"https://openalex.org/I4210113430","display_name":"Tecnalia","ror":"https://ror.org/02fv8hj62","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210113430"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Telmo Blasco","raw_affiliation_strings":["Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain"],"affiliations":[{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","institution_ids":["https://openalex.org/I4210113430"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056014601","display_name":"Sergio P\u00e9rez-Burillo","orcid":"https://orcid.org/0000-0001-6398-7496"},"institutions":[{"id":"https://openalex.org/I4210113430","display_name":"Tecnalia","ror":"https://ror.org/02fv8hj62","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210113430"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sergio P\u00e9rez-Burillo","raw_affiliation_strings":["Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain"],"affiliations":[{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","institution_ids":["https://openalex.org/I4210113430"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021297859","display_name":"M. Pilar Francino","orcid":"https://orcid.org/0000-0002-4510-5653"},"institutions":[{"id":"https://openalex.org/I4210097149","display_name":"Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana","ror":"https://ror.org/0116vew40","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210097149"]},{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M Pilar Francino","raw_affiliation_strings":["Area de Gen\u00f3mica y Salud, Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana-Salud P\u00fablica , Valencia, 46020,","CIBER en Epidemiolog\u00eda y Salud P\u00fablica , Madrid,"],"affiliations":[{"raw_affiliation_string":"Area de Gen\u00f3mica y Salud, Fundaci\u00f3n para el Fomento de la Investigaci\u00f3n Sanitaria y Biom\u00e9dica de la Comunitat Valenciana-Salud P\u00fablica , Valencia, 46020,","institution_ids":["https://openalex.org/I4210097149"]},{"raw_affiliation_string":"CIBER en Epidemiolog\u00eda y Salud P\u00fablica , Madrid,","institution_ids":["https://openalex.org/I4210154894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024132001","display_name":"Jos\u00e9 \u00c1ngel Rufi\u00e1n\u2010Henares","orcid":"https://orcid.org/0000-0002-1428-4353"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 \u00c1 Rufi\u00e1n-Henares","raw_affiliation_strings":["Departamento de Nutrici\u00f3n y Bromatolog\u00eda, Instituto de Nutrici\u00f3n y Tecnolog\u00eda de los Alimentos, Centro de Investigaci\u00f3n Biom\u00e9dica, Universidad de Granada , Granada, 18071,","Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA, Universidad de Granada , Granada, 18071,"],"affiliations":[{"raw_affiliation_string":"Departamento de Nutrici\u00f3n y Bromatolog\u00eda, Instituto de Nutrici\u00f3n y Tecnolog\u00eda de los Alimentos, Centro de Investigaci\u00f3n Biom\u00e9dica, Universidad de Granada , Granada, 18071,","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA, Universidad de Granada , Granada, 18071,","institution_ids":["https://openalex.org/I4210113665","https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040584996","display_name":"Luis V. Valc\u00e1rcel","orcid":"https://orcid.org/0000-0003-3769-5419"},"institutions":[{"id":"https://openalex.org/I4210113430","display_name":"Tecnalia","ror":"https://ror.org/02fv8hj62","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210113430"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luis V Valcarcel","raw_affiliation_strings":["Biomedical Engineering Center, University of Navarra , Pamplona 31009,","Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra , Pamplona 31009,","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra, Pamplona, 31009, Spain","Biomedical Engineering Center, University of Navarra, Pamplona, 31009, Spain","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering Center, University of Navarra , Pamplona 31009,","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra , Pamplona 31009,","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","institution_ids":["https://openalex.org/I4210113430"]},{"raw_affiliation_string":"Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra, Pamplona, 31009, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Biomedical Engineering Center, University of Navarra, Pamplona, 31009, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010754980","display_name":"Francisco J. Planes","orcid":"https://orcid.org/0000-0003-1155-3105"},"institutions":[{"id":"https://openalex.org/I4210113430","display_name":"Tecnalia","ror":"https://ror.org/02fv8hj62","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210113430"]},{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco J Planes","raw_affiliation_strings":["Biomedical Engineering Center, University of Navarra , Pamplona 31009,","Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra , Pamplona 31009,","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain","Biomedical Engineering Center, University of Navarra, Pamplona, 31009, Spain","Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra, Pamplona, 31009, Spain"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering Center, University of Navarra , Pamplona 31009,","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra , Pamplona 31009,","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra , San Sebastian 20018,","institution_ids":["https://openalex.org/I4210113430"]},{"raw_affiliation_string":"Tecnun School of Engineering, Biomedical Engineering and Sciences Department, University of Navarra, San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Biomedical Engineering Center, University of Navarra, Pamplona, 31009, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Instituto de Ciencia de los Datos e Inteligencia Artificial (DATAI), University of Navarra, Pamplona, 31009, Spain","institution_ids":["https://openalex.org/I88155538"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5067155110"],"corresponding_institution_ids":["https://openalex.org/I4210113430","https://openalex.org/I88155538"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1659,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.77739048,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"40","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9671000242233276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/16s-ribosomal-rna","display_name":"16S ribosomal RNA","score":0.5830222964286804},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5792144536972046},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5526599287986755},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5077155828475952},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.45003411173820496},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.4400206208229065},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3429475426673889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3130127787590027},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28382325172424316},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16669461131095886},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06221124529838562}],"concepts":[{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.5830222964286804},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5792144536972046},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5526599287986755},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5077155828475952},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.45003411173820496},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.4400206208229065},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3429475426673889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3130127787590027},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28382325172424316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16669461131095886},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06221124529838562}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btae455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae455","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae455/58575887/btae455.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39018187","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39018187","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/97475","is_oa":true,"landing_page_url":"https://hdl.handle.net/10481/97475","pdf_url":"https://digibug.ugr.es/bitstream/10481/97475/1/btae455.pdf","source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11561042","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11561042","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11561042/pdf/btae455.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:riuma.uma.es:10630/38634","is_oa":true,"landing_page_url":"https://hdl.handle.net/10630/38634","pdf_url":null,"source":{"id":"https://openalex.org/S4306401385","display_name":"Repositorio Institucional de la Universidad de M\u00e1laga (University of M\u00e1laga)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82767444","host_organization_name":"Universidad de M\u00e1laga","host_organization_lineage":["https://openalex.org/I82767444"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"VoR"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae455","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae455/58575887/btae455.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1346408566","display_name":null,"funder_award_id":"HEALTH","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5515204682","display_name":null,"funder_award_id":"816303","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400800911.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2023000840","https://openalex.org/W2036006402","https://openalex.org/W2055043387","https://openalex.org/W2110256992","https://openalex.org/W2159482845","https://openalex.org/W2340423564","https://openalex.org/W2342540743","https://openalex.org/W2401404581","https://openalex.org/W2559597060","https://openalex.org/W2561141101","https://openalex.org/W2604323123","https://openalex.org/W2767088268","https://openalex.org/W2807194798","https://openalex.org/W2809358912","https://openalex.org/W2951327715","https://openalex.org/W2963276645","https://openalex.org/W3030441098","https://openalex.org/W3031621681","https://openalex.org/W3158308451","https://openalex.org/W3174325225","https://openalex.org/W3190067671","https://openalex.org/W3193433002","https://openalex.org/W4210300516","https://openalex.org/W4210851913","https://openalex.org/W4226342858","https://openalex.org/W4285093271","https://openalex.org/W4294216483","https://openalex.org/W4295123777","https://openalex.org/W4317499868","https://openalex.org/W4386136714"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W3111703679","https://openalex.org/W2533039529","https://openalex.org/W2883983284","https://openalex.org/W3009923349","https://openalex.org/W1984829519","https://openalex.org/W4318269789","https://openalex.org/W4389235700","https://openalex.org/W4399755008","https://openalex.org/W1968982238"],"abstract_inverted_index":{"Python":[0],"code":[1],"of":[2],"q2-metnet":[3],"is":[4],"available":[5],"in":[6],"https://github.com/PlanesLab/q2-metnet":[7],"and":[8],"https://figshare.com/articles/dataset/q2-metnet_package/26180446.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2024-07-19T00:00:00"}
