{"id":"https://openalex.org/W4400678867","doi":"https://doi.org/10.1093/bioinformatics/btae451","title":"Unraveling spatial domain characterization in spatially resolved transcriptomics with robust graph contrastive clustering","display_name":"Unraveling spatial domain characterization in spatially resolved transcriptomics with robust graph contrastive clustering","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4400678867","doi":"https://doi.org/10.1093/bioinformatics/btae451","pmid":"https://pubmed.ncbi.nlm.nih.gov/39012523"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae451","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae451","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae451/58653464/btae451.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae451/58653464/btae451.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042595786","display_name":"Yingxi Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yingxi Zhang","raw_affiliation_strings":["School of Artificial Intelligence, Jilin University , Changchun 130012, China"],"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Jilin University , Changchun 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084281761","display_name":"Zhuohan Yu","orcid":"https://orcid.org/0009-0006-1026-5354"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuohan Yu","raw_affiliation_strings":["School of Artificial Intelligence, Jilin University , Changchun 130012, China"],"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Jilin University , Changchun 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030015771","display_name":"Ka\u2010Chun Wong","orcid":"https://orcid.org/0000-0001-6062-733X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ka-Chun Wong","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Hong Kong 999077, Hong Kong SAR"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong 999077, Hong Kong SAR","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102718214","display_name":"Xiangtao Li","orcid":"https://orcid.org/0000-0002-8716-9823"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangtao Li","raw_affiliation_strings":["School of Artificial Intelligence, Jilin University , Changchun 130012, China"],"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Jilin University , Changchun 130012, China","institution_ids":["https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042595786"],"corresponding_institution_ids":["https://openalex.org/I194450716"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9058,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.73500826,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"40","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.958899974822998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7265955805778503},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6808991432189941},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.6460119485855103},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.5080461502075195},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47763481736183167},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46885570883750916},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.441540390253067},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44057974219322205},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.431281715631485},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.323481947183609},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.18279936909675598},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09992450475692749}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7265955805778503},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6808991432189941},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.6460119485855103},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.5080461502075195},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47763481736183167},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46885570883750916},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.441540390253067},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44057974219322205},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.431281715631485},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.323481947183609},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.18279936909675598},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09992450475692749},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae451","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae451","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae451/58653464/btae451.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39012523","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39012523","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/d7ee1ae1-e1af-40a3-aaf3-8090d9a17ff6","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/d7ee1ae1-e1af-40a3-aaf3-8090d9a17ff6","pdf_url":"https://scholars.cityu.edu.hk/files/253593714/237775929.pdf","source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Zhang, Y, Yu, Z, Wong, K-C & Li, X 2024, 'Unraveling spatial domain characterization in spatially resolved transcriptomics with robust graph contrastive clustering', Bioinformatics, vol. 40, no. 7, btae451. https://doi.org/10.1093/bioinformatics/btae451","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11272174","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11272174","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11272174/pdf/btae451.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae451","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae451","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae451/58653464/btae451.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.7300000190734863,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3605434345","display_name":null,"funder_award_id":"62076109","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322174","display_name":"People's Government of Jilin Province","ror":"https://ror.org/02fzqav45"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400678867.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1921320152","https://openalex.org/W1967880683","https://openalex.org/W1974565082","https://openalex.org/W1995547461","https://openalex.org/W1996435746","https://openalex.org/W2076977967","https://openalex.org/W2080572933","https://openalex.org/W2087528029","https://openalex.org/W2131681506","https://openalex.org/W2291828840","https://openalex.org/W2598598292","https://openalex.org/W2600688828","https://openalex.org/W2797528971","https://openalex.org/W2800392236","https://openalex.org/W2897249806","https://openalex.org/W2915848182","https://openalex.org/W2972445800","https://openalex.org/W3021920958","https://openalex.org/W3036371598","https://openalex.org/W3099768174","https://openalex.org/W3106188259","https://openalex.org/W3108118546","https://openalex.org/W3112563877","https://openalex.org/W3126958162","https://openalex.org/W3132829024","https://openalex.org/W3134482219","https://openalex.org/W3138548670","https://openalex.org/W3164692211","https://openalex.org/W3165120573","https://openalex.org/W3191824479","https://openalex.org/W4221090422","https://openalex.org/W4226192560","https://openalex.org/W4229033508","https://openalex.org/W4244166529","https://openalex.org/W4285388882","https://openalex.org/W4289745500","https://openalex.org/W4290154117","https://openalex.org/W4306406844","https://openalex.org/W4309918428","https://openalex.org/W4317888741","https://openalex.org/W4327740198","https://openalex.org/W4379791907","https://openalex.org/W4388997570","https://openalex.org/W4390814844","https://openalex.org/W4392015770","https://openalex.org/W6802889560","https://openalex.org/W6858709717"],"related_works":["https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W3208297503","https://openalex.org/W2889153461","https://openalex.org/W3119773509","https://openalex.org/W2964117661","https://openalex.org/W4388405611","https://openalex.org/W2619127353","https://openalex.org/W4285218279"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
