{"id":"https://openalex.org/W4400408929","doi":"https://doi.org/10.1093/bioinformatics/btae443","title":"scMaSigPro: differential expression analysis along single-cell trajectories","display_name":"scMaSigPro: differential expression analysis along single-cell trajectories","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4400408929","doi":"https://doi.org/10.1093/bioinformatics/btae443","pmid":"https://pubmed.ncbi.nlm.nih.gov/38976653"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae443/58644462/btae443.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae443/58644462/btae443.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073153180","display_name":"Priyansh Srivastava","orcid":"https://orcid.org/0000-0003-2618-5296"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Priyansh Srivastava","raw_affiliation_strings":["BioBam Bioinformatics S.L. , Valencia, 46024, Spain","Department of Computer Science, University of Valencia , Valencia, 46100, Spain"],"affiliations":[{"raw_affiliation_string":"BioBam Bioinformatics S.L. , Valencia, 46024, Spain","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Valencia , Valencia, 46100, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033874902","display_name":"Marta Benegas Coll","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marta Benegas Coll","raw_affiliation_strings":["BioBam Bioinformatics S.L. , Valencia, 46024, Spain"],"affiliations":[{"raw_affiliation_string":"BioBam Bioinformatics S.L. , Valencia, 46024, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101526928","display_name":"Stefan G\u00f6tz","orcid":"https://orcid.org/0000-0001-5777-3520"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan G\u00f6tz","raw_affiliation_strings":["BioBam Bioinformatics S.L. , Valencia, 46024, Spain"],"affiliations":[{"raw_affiliation_string":"BioBam Bioinformatics S.L. , Valencia, 46024, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007029827","display_name":"Mar\u00eda Jos\u00e9 Nueda","orcid":"https://orcid.org/0000-0002-1666-4771"},"institutions":[{"id":"https://openalex.org/I130194489","display_name":"University of Alicante","ror":"https://ror.org/05t8bcz72","country_code":"ES","type":"education","lineage":["https://openalex.org/I130194489"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Jos\u00e9 Nueda","raw_affiliation_strings":["Mathematics Department, University of Alicante , Alicante, 03690, Spain"],"affiliations":[{"raw_affiliation_string":"Mathematics Department, University of Alicante , Alicante, 03690, Spain","institution_ids":["https://openalex.org/I130194489"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002377126","display_name":"Ana Conesa","orcid":"https://orcid.org/0000-0001-9597-311X"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana Conesa","raw_affiliation_strings":["Institute for Integrative Systems Biology (I2SysBio), Consejo Superior de Investigaciones Cient\u0131ficas (CSIC) , Paterna, 46980, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), Consejo Superior de Investigaciones Cient\u0131ficas (CSIC) , Paterna, 46980, Spain","institution_ids":["https://openalex.org/I4210152685","https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5073153180"],"corresponding_institution_ids":["https://openalex.org/I16097986"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2281,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55796395,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"40","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.750643253326416},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6715254783630371},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5815873742103577},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5681383013725281},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.5093070268630981},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.5084342360496521},{"id":"https://openalex.org/keywords/branching","display_name":"Branching (polymer chemistry)","score":0.4887065887451172},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4377066195011139},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43287163972854614},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41837942600250244},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36980724334716797},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3377686142921448},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33260101079940796},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19579899311065674},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10351544618606567},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07165125012397766}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.750643253326416},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6715254783630371},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5815873742103577},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5681383013725281},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.5093070268630981},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.5084342360496521},{"id":"https://openalex.org/C206175624","wikidata":"https://www.wikidata.org/wiki/Q595731","display_name":"Branching (polymer chemistry)","level":2,"score":0.4887065887451172},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4377066195011139},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43287163972854614},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41837942600250244},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36980724334716797},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3377686142921448},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33260101079940796},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19579899311065674},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10351544618606567},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07165125012397766},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae443/58644462/btae443.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38976653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38976653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11269465","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11269465","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11269465/pdf/btae443.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:rua.ua.es:10045/144999","is_oa":true,"landing_page_url":"http://hdl.handle.net/10045/144999","pdf_url":null,"source":{"id":"https://openalex.org/S4306400416","display_name":"Repositorio Institucional de la Universidad de Alicante (Universidad de Alicante)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130194489","host_organization_name":"University of Alicante","host_organization_lineage":["https://openalex.org/I130194489"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/7/btae443/58644462/btae443.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G1974542962","display_name":null,"funder_award_id":"Sk\u0142odowska","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2689612763","display_name":null,"funder_award_id":"Marie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3527445289","display_name":"Exploring cell-to-cell heterogeneity and exploiting epigenetic regulation for the interception of myeloid disease cells.","funder_award_id":"953407","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4447653093","display_name":null,"funder_award_id":"Network","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400408929.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1984883254","https://openalex.org/W2105559737","https://openalex.org/W2142433339","https://openalex.org/W2318878471","https://openalex.org/W2916020270","https://openalex.org/W2925075625","https://openalex.org/W2949067670","https://openalex.org/W2951506174","https://openalex.org/W3009370296","https://openalex.org/W3091376159","https://openalex.org/W3157788795","https://openalex.org/W3159652022","https://openalex.org/W3164692211","https://openalex.org/W3165360138","https://openalex.org/W4214611015","https://openalex.org/W4288625073","https://openalex.org/W4312192950","https://openalex.org/W4378212544","https://openalex.org/W6809048309"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W4384009753","https://openalex.org/W4292228088","https://openalex.org/W2791776396","https://openalex.org/W2137111266","https://openalex.org/W4286531993"],"abstract_inverted_index":{"scMaSigPro":[0],"is":[1],"available":[2],"as":[3],"a":[4],"free":[5],"R":[6],"package":[7],"(version":[8],"4.0":[9],"or":[10],"higher)":[11],"under":[12],"the":[13],"GPL(\u22652)":[14],"license":[15],"on":[16,25],"GitHub":[17],"at":[18,27],"'github.com/BioBam/scMaSigPro'":[19],"and":[20],"archived":[21],"with":[22],"version":[23],"0.03":[24],"Zenodo":[26],"'zenodo.org/records/12568922'.":[28]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
