{"id":"https://openalex.org/W4402253328","doi":"https://doi.org/10.1093/bioinformatics/btae392","title":"HCS\u2014hierarchical algorithm for simulation of omics datasets","display_name":"HCS\u2014hierarchical algorithm for simulation of omics datasets","publication_year":2024,"publication_date":"2024-09-01","ids":{"openalex":"https://openalex.org/W4402253328","doi":"https://doi.org/10.1093/bioinformatics/btae392","pmid":"https://pubmed.ncbi.nlm.nih.gov/39230692"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae392","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae392","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/Supplement_2/ii98/59016914/btae392.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/Supplement_2/ii98/59016914/btae392.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092251530","display_name":"Piotr Stomma","orcid":"https://orcid.org/0000-0002-2603-8205"},"institutions":[{"id":"https://openalex.org/I245364917","display_name":"University of Bia\u0142ystok","ror":"https://ror.org/01qaqcf60","country_code":"PL","type":"education","lineage":["https://openalex.org/I245364917"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Piotr Stomma","raw_affiliation_strings":["Computational Centre, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland","Faculty of Computer Science, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland"],"affiliations":[{"raw_affiliation_string":"Computational Centre, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland","institution_ids":["https://openalex.org/I245364917"]},{"raw_affiliation_string":"Faculty of Computer Science, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland","institution_ids":["https://openalex.org/I245364917"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065166985","display_name":"Witold R. Rudnicki","orcid":"https://orcid.org/0000-0002-7928-4944"},"institutions":[{"id":"https://openalex.org/I245364917","display_name":"University of Bia\u0142ystok","ror":"https://ror.org/01qaqcf60","country_code":"PL","type":"education","lineage":["https://openalex.org/I245364917"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Witold R Rudnicki","raw_affiliation_strings":["Computational Centre, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland","Faculty of Computer Science, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland"],"affiliations":[{"raw_affiliation_string":"Computational Centre, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland","institution_ids":["https://openalex.org/I245364917"]},{"raw_affiliation_string":"Faculty of Computer Science, University of Bia\u0142ystok , Bia\u0142ystok 15-245, Poland","institution_ids":["https://openalex.org/I245364917"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5092251530"],"corresponding_institution_ids":["https://openalex.org/I245364917"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2447,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57979631,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"40","issue":"Supplement_2","first_page":"ii98","last_page":"ii104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.789996862411499},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6949411034584045},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.6752125024795532},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.609133243560791},{"id":"https://openalex.org/keywords/fidelity","display_name":"Fidelity","score":0.6010638475418091},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.592643141746521},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4965572953224182},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4510268568992615},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3816509246826172},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3813660442829132},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1251649558544159}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.789996862411499},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6949411034584045},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.6752125024795532},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.609133243560791},{"id":"https://openalex.org/C2776459999","wikidata":"https://www.wikidata.org/wiki/Q2119376","display_name":"Fidelity","level":2,"score":0.6010638475418091},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.592643141746521},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4965572953224182},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4510268568992615},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3816509246826172},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3813660442829132},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1251649558544159},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae392","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae392","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/Supplement_2/ii98/59016914/btae392.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39230692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39230692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11373347","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11373347","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11373347/pdf/btae392.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae392","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae392","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/Supplement_2/ii98/59016914/btae392.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4000000059604645,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2185726547","display_name":null,"funder_award_id":"UMO-2020/38/E/NZ2/00598","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402253328.pdf","grobid_xml":"https://content.openalex.org/works/W4402253328.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1534408902","https://openalex.org/W1738124305","https://openalex.org/W1966327575","https://openalex.org/W1975900269","https://openalex.org/W2002850151","https://openalex.org/W2056780622","https://openalex.org/W2060705109","https://openalex.org/W2091560152","https://openalex.org/W2104042033","https://openalex.org/W2109890799","https://openalex.org/W2117756735","https://openalex.org/W2127048411","https://openalex.org/W2133254377","https://openalex.org/W2133465414","https://openalex.org/W2152602212","https://openalex.org/W2164998314","https://openalex.org/W2375577403","https://openalex.org/W2558582691","https://openalex.org/W2791975541","https://openalex.org/W2949177718","https://openalex.org/W2951271819","https://openalex.org/W3040750692","https://openalex.org/W3102641634","https://openalex.org/W3126033509","https://openalex.org/W3129911909","https://openalex.org/W3165591717","https://openalex.org/W4239569515","https://openalex.org/W4284879216","https://openalex.org/W6665649292"],"related_works":["https://openalex.org/W2381850946","https://openalex.org/W4380449851","https://openalex.org/W3125091513","https://openalex.org/W4318832338","https://openalex.org/W3162204513","https://openalex.org/W1919390113","https://openalex.org/W4248383205","https://openalex.org/W4234745530","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"The":[0],"code":[1],"and":[2],"data":[3],"is":[4],"available":[5],"at:":[6],"https://github.com/p100mma/hcrs_omics.":[7]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-10T14:07:55.174380","created_date":"2025-10-10T00:00:00"}