{"id":"https://openalex.org/W4399759792","doi":"https://doi.org/10.1093/bioinformatics/btae368","title":"Knowledge transfer from macro-world to micro-world: enhancing 3D Cryo-ET classification through fine-tuning video-based deep models","display_name":"Knowledge transfer from macro-world to micro-world: enhancing 3D Cryo-ET classification through fine-tuning video-based deep models","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4399759792","doi":"https://doi.org/10.1093/bioinformatics/btae368","pmid":"https://pubmed.ncbi.nlm.nih.gov/38889274"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae368","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae368","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae368/58272236/btae368.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae368/58272236/btae368.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006038219","display_name":"Sabhay Jain","orcid":"https://orcid.org/0009-0002-1018-917X"},"institutions":[{"id":"https://openalex.org/I94234084","display_name":"Indian Institute of Technology Kanpur","ror":"https://ror.org/05pjsgx75","country_code":"IN","type":"education","lineage":["https://openalex.org/I94234084"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sabhay Jain","raw_affiliation_strings":["Electrical Engineering Department, Indian Institute of Technology Kanpur , Kanpur, Uttar Pradesh, 208016, India"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering Department, Indian Institute of Technology Kanpur , Kanpur, Uttar Pradesh, 208016, India","institution_ids":["https://openalex.org/I94234084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100770663","display_name":"Xingjian Li","orcid":"https://orcid.org/0000-0001-8073-7552"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xingjian Li","raw_affiliation_strings":["Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University , Pittsburgh, Pennsylvania, 15213, United States"],"affiliations":[{"raw_affiliation_string":"Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University , Pittsburgh, Pennsylvania, 15213, United States","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000807861","display_name":"Min Xu","orcid":"https://orcid.org/0000-0002-0881-5891"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Xu","raw_affiliation_strings":["Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University , Pittsburgh, Pennsylvania, 15213, United States"],"affiliations":[{"raw_affiliation_string":"Ray and Stephanie Lane Computational Biology Department, Carnegie Mellon University , Pittsburgh, Pennsylvania, 15213, United States","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5006038219"],"corresponding_institution_ids":["https://openalex.org/I94234084"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18598105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10572","display_name":"Geophysical and Geoelectrical Methods","score":0.9555000066757202,"subfield":{"id":"https://openalex.org/subfields/1908","display_name":"Geophysics"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10572","display_name":"Geophysical and Geoelectrical Methods","score":0.9555000066757202,"subfield":{"id":"https://openalex.org/subfields/1908","display_name":"Geophysics"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.95169997215271,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8489124774932861},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.7248862385749817},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.715516209602356},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5939573049545288},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5909949541091919},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5053773522377014},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37872812151908875}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8489124774932861},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.7248862385749817},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.715516209602356},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5939573049545288},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5909949541091919},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5053773522377014},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37872812151908875},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae368","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae368","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae368/58272236/btae368.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38889274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38889274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11269433","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11269433","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11269433/pdf/btae368.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/29951237","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal contribution"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae368","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae368","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae368/58272236/btae368.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G106789976","display_name":null,"funder_award_id":"2205148","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1185271123","display_name":null,"funder_award_id":"BI-1949","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2276838603","display_name":"Collaborative Research: III: Medium: Systematic De Novo Identification of Macromolecular Complexes in Cryo-Electron Tomography Images","funder_award_id":"2211597","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3104744183","display_name":null,"funder_award_id":"P41GM103712","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3778177127","display_name":"III: Small: Improving automation and speed of macromolecule recognition and localization in cryo-electron tomography using unsupervised deep learning","funder_award_id":"2007595","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5412449872","display_name":null,"funder_award_id":"P41GM10371","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6380147298","display_name":null,"funder_award_id":"GM103712","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6667548693","display_name":null,"funder_award_id":"R01GM134020","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6827548176","display_name":null,"funder_award_id":"DBI-1949629","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G688837404","display_name":"IIBR Informatics: Reducing the training data annotation cost for learning-based macromolecule identification in cellular electron cryo-tomography","funder_award_id":"1949629","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7655330566","display_name":null,"funder_award_id":"IIS-2007595","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8911485489","display_name":"CAREER: Cryo-electron tomography derived multiscale integrative modeling of subcellular organization","funder_award_id":"2238093","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399759792.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2060277733","https://openalex.org/W2089541413","https://openalex.org/W2115251427","https://openalex.org/W2169803474","https://openalex.org/W2187089797","https://openalex.org/W2530452081","https://openalex.org/W2736403501","https://openalex.org/W2890741060","https://openalex.org/W2896966666","https://openalex.org/W2920492823","https://openalex.org/W2949882099","https://openalex.org/W2971339032","https://openalex.org/W2996403968","https://openalex.org/W3023285554","https://openalex.org/W3046191090","https://openalex.org/W3085208059","https://openalex.org/W3089400930","https://openalex.org/W3122807430","https://openalex.org/W3131203871","https://openalex.org/W3207554858","https://openalex.org/W3212653573","https://openalex.org/W4200453770","https://openalex.org/W4223899585","https://openalex.org/W4293545350","https://openalex.org/W4399757462","https://openalex.org/W6767101815","https://openalex.org/W6777204456","https://openalex.org/W6803124027"],"related_works":["https://openalex.org/W4386121542","https://openalex.org/W4206357785","https://openalex.org/W4281381188","https://openalex.org/W3192840557","https://openalex.org/W2951211570","https://openalex.org/W4375928479","https://openalex.org/W3167935049","https://openalex.org/W3023427754","https://openalex.org/W3131673289","https://openalex.org/W4393011546"],"abstract_inverted_index":{"https://github.com/xulabs/aitom.":[0]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}