{"id":"https://openalex.org/W4399759811","doi":"https://doi.org/10.1093/bioinformatics/btae365","title":"OLB-AC: toward optimizing ligand bioactivities through deep graph learning and activity cliffs","display_name":"OLB-AC: toward optimizing ligand bioactivities through deep graph learning and activity cliffs","publication_year":2024,"publication_date":"2024-06-01","ids":{"openalex":"https://openalex.org/W4399759811","doi":"https://doi.org/10.1093/bioinformatics/btae365","pmid":"https://pubmed.ncbi.nlm.nih.gov/38889277"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae365","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae365/58272252/btae365.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae365/58272252/btae365.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026015013","display_name":"Yueming Yin","orcid":"https://orcid.org/0000-0002-9060-3248"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN","SG"],"is_corresponding":false,"raw_author_name":"Yueming Yin","raw_affiliation_strings":["College of Computing and Data Science, Nanyang Technological University , 639798, Singapore","School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","School of Computer Science and Engineering, Nanyang Technological University, Singapore, 639798","School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China"],"raw_orcid":"https://orcid.org/0000-0002-9060-3248","affiliations":[{"raw_affiliation_string":"College of Computing and Data Science, Nanyang Technological University , 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","institution_ids":["https://openalex.org/I41198531"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China","institution_ids":["https://openalex.org/I41198531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101788068","display_name":"Haifeng Hu","orcid":"https://orcid.org/0000-0002-6585-3106"},"institutions":[{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haifeng Hu","raw_affiliation_strings":["School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China"],"raw_orcid":"https://orcid.org/0000-0002-6585-3106","affiliations":[{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","institution_ids":["https://openalex.org/I41198531"]},{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China","institution_ids":["https://openalex.org/I41198531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024932260","display_name":"Jitao Yang","orcid":"https://orcid.org/0000-0003-1387-5909"},"institutions":[{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jitao Yang","raw_affiliation_strings":["School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","institution_ids":["https://openalex.org/I41198531"]},{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China","institution_ids":["https://openalex.org/I41198531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005819504","display_name":"Chun Ye","orcid":"https://orcid.org/0000-0001-6560-3783"},"institutions":[{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun Ye","raw_affiliation_strings":["School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications , Nanjing 210003, China","institution_ids":["https://openalex.org/I41198531"]},{"raw_affiliation_string":"School of Telecommunications and Information Engineering, Nanjing University of Posts and Telecommunications, Nanjing, 210003, China","institution_ids":["https://openalex.org/I41198531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054040512","display_name":"Wilson Wen Bin Goh","orcid":"https://orcid.org/0000-0003-3863-7501"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","SG"],"is_corresponding":false,"raw_author_name":"Wilson Wen Bin Goh","raw_affiliation_strings":["Center for AI in Medicine, Nanyang Technological University , 639798, Singapore","Center for Biomedical Informatics, Nanyang Technological University , 637551, Singapore","Division of Neurology, Department of Brain Sciences, Faculty of Medicine, Imperial College London , London W12 0NN, U.K","Lee Kong Chian School of Medicine, Nanyang Technological University , 637551, Singapore","School of Biological Sciences, Nanyang Technological University , 637551, Singapore","Lee Kong Chian School of Medicine, and Center for Biomedical Informatics, Nanyang Technological University, Singapore, 637551"],"raw_orcid":"https://orcid.org/0000-0003-3863-7501","affiliations":[{"raw_affiliation_string":"Center for AI in Medicine, Nanyang Technological University , 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Nanyang Technological University , 637551, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Division of Neurology, Department of Brain Sciences, Faculty of Medicine, Imperial College London , London W12 0NN, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, Nanyang Technological University , 637551, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University , 637551, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Lee Kong Chian School of Medicine, and Center for Biomedical Informatics, Nanyang Technological University, Singapore, 637551","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047970310","display_name":"Adams Wai\u2010Kin Kong","orcid":"https://orcid.org/0000-0002-9728-9511"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Adams Wai-Kin Kong","raw_affiliation_strings":["College of Computing and Data Science, Nanyang Technological University , 639798, Singapore","School of Computer Science and Engineering, Nanyang Technological University, Singapore, 639798"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing and Data Science, Nanyang Technological University , 639798, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102847901","display_name":"Jiansheng Wu","orcid":"https://orcid.org/0000-0002-7941-9722"},"institutions":[{"id":"https://openalex.org/I41198531","display_name":"Nanjing University of Posts and Telecommunications","ror":"https://ror.org/043bpky34","country_code":"CN","type":"education","lineage":["https://openalex.org/I41198531"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiansheng Wu","raw_affiliation_strings":["School of Computer Science, Nanjing University of Posts and Telecommunications , Nanjing 210023, China","School of Computer Science, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China"],"raw_orcid":"https://orcid.org/0000-0002-7941-9722","affiliations":[{"raw_affiliation_string":"School of Computer Science, Nanjing University of Posts and Telecommunications , Nanjing 210023, China","institution_ids":["https://openalex.org/I41198531"]},{"raw_affiliation_string":"School of Computer Science, Nanjing University of Posts and Telecommunications, Nanjing, 210023, China","institution_ids":["https://openalex.org/I41198531"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101788068","https://openalex.org/A5102847901"],"corresponding_institution_ids":["https://openalex.org/I41198531"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5104,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65491536,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"40","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.727279543876648},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.6853963136672974},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5505733489990234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4175794720649719},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35661688446998596},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.316422700881958},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2744036018848419},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09479355812072754}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.727279543876648},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.6853963136672974},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5505733489990234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4175794720649719},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35661688446998596},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.316422700881958},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2744036018848419},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09479355812072754},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae365","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae365/58272252/btae365.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38889277","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38889277","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11208724","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11208724","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11208724/pdf/btae365.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae365","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae365/58272252/btae365.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.6800000071525574,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G1977326333","display_name":null,"funder_award_id":"62371245","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399759811.pdf"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1980449888","https://openalex.org/W1990399577","https://openalex.org/W2059805510","https://openalex.org/W2100257305","https://openalex.org/W2112415299","https://openalex.org/W2187089797","https://openalex.org/W2290847742","https://openalex.org/W2319432648","https://openalex.org/W2410846838","https://openalex.org/W2541170635","https://openalex.org/W2580783751","https://openalex.org/W2733454913","https://openalex.org/W2782083554","https://openalex.org/W2803615944","https://openalex.org/W2810023675","https://openalex.org/W2900090807","https://openalex.org/W2937994991","https://openalex.org/W2948035163","https://openalex.org/W2956586889","https://openalex.org/W2964113829","https://openalex.org/W2968734407","https://openalex.org/W3007743886","https://openalex.org/W3097145107","https://openalex.org/W3100157108","https://openalex.org/W3100358278","https://openalex.org/W3114373613","https://openalex.org/W3122066254","https://openalex.org/W3139001571","https://openalex.org/W3154258817","https://openalex.org/W3163110090","https://openalex.org/W3167283626","https://openalex.org/W3184513841","https://openalex.org/W3195175841","https://openalex.org/W3202141932","https://openalex.org/W4213420837","https://openalex.org/W4226068197","https://openalex.org/W4289110734","https://openalex.org/W4297179162","https://openalex.org/W4319158927","https://openalex.org/W4319793309","https://openalex.org/W4366188919","https://openalex.org/W4367049415","https://openalex.org/W6685350579","https://openalex.org/W6849906288","https://openalex.org/W6852609972"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2053286651","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2181413294","https://openalex.org/W2989452537","https://openalex.org/W2052122378","https://openalex.org/W2544423928","https://openalex.org/W2062023542"],"abstract_inverted_index":{"MOTIVATION:":[0],"Deep":[1],"graph":[2,128,139],"learning":[3],"(DGL)":[4],"has":[5],"been":[6,46],"widely":[7],"employed":[8,223],"in":[9,38,53,216,280],"the":[10,23,54,99,117,168,197,229,251,267],"realm":[11],"of":[12,25,56,119,167,203,231,264],"ligand-based":[13],"virtual":[14],"screening.":[15],"Within":[16],"this":[17,281],"field,":[18],"a":[19,61,82,109,125],"key":[20],"hurdle":[21],"is":[22],"existence":[24],"activity":[26],"cliffs":[27],"(ACs),":[28],"where":[29],"minor":[30],"chemical":[31],"alterations":[32],"can":[33],"lead":[34],"to":[35,48,85,101],"significant":[36],"changes":[37],"bioactivity.":[39],"In":[40],"response,":[41],"several":[42],"DGL":[43,93],"models":[44],"have":[45],"developed":[47,279],"enhance":[49],"ligand":[50,69,90,103,114,133,225],"bioactivity":[51,155,232,244,269],"prediction":[52,156,239,270],"presence":[55],"ACs.":[57],"Yet,":[58],"there":[59],"remains":[60],"largely":[62],"unexplored":[63],"opportunity":[64],"within":[65],"ACs":[66,95],"for":[67,76,112,224],"optimizing":[68,113],"bioactivity,":[70],"making":[71],"it":[72],"an":[73,261],"area":[74],"ripe":[75],"further":[77],"investigation.":[78],"RESULTS:":[79],"We":[80],"present":[81,215],"novel":[83,126,212],"approach":[84],"simultaneously":[86],"predict":[87],"and":[88,94,132,146,277],"optimize":[89,102],"bioactivities":[91,115],"through":[92,149,172],"(OLB-AC).":[96],"OLB-AC":[97,173,210,249],"possesses":[98],"capability":[100],"molecules":[104,170],"located":[105],"near":[106],"ACs,":[107],"providing":[108],"direct":[110],"reference":[111],"with":[116,260],"matching":[118],"original":[120,144],"ligands.":[121],"To":[122],"accomplish":[123],"this,":[124],"attentive":[127],"reconstruction":[129,140],"neural":[130,141],"network":[131,142],"optimization":[134,174,226],"scheme":[135],"are":[136,186,283],"proposed.":[137],"Attentive":[138],"reconstructs":[143],"ligands":[145,195],"optimizes":[147],"them":[148],"adversarial":[150,221],"representations":[151,222],"derived":[152],"from":[153,228],"their":[154,217],"process.":[157],"Experimental":[158],"results":[159],"on":[160,175,257],"nine":[161],"drug":[162],"targets":[163],"reveal":[164,211],"that":[165,248],"out":[166,202],"667":[169],"generated":[171,208],"datasets":[176],"comprising":[177],"974":[178],"low-activity,":[179],"noninhibitor,":[180],"or":[181,193],"highly":[182,190],"toxic":[183],"ligands,":[184],"49":[185,204],"recognized":[187],"as":[188],"known":[189],"active,":[191],"inhibitor,":[192],"nontoxic":[194],"beyond":[196],"datasets'":[198],"scope.":[199],"The":[200,220,275],"27":[201],"matched":[205],"molecular":[206],"pairs":[207],"by":[209],"transformations":[213],"not":[214],"training":[218],"sets.":[219],"originate":[227],"gradients":[230],"predictions.":[233],"Therefore,":[234],"we":[235],"also":[236],"assess":[237],"OLB-AC's":[238],"accuracy":[240],"across":[241],"33":[242],"different":[243],"datasets.":[245],"Results":[246],"show":[247],"achieves":[250],"best":[252],"Pearson":[253],"correlation":[254],"coefficient":[255],"(r2)":[256],"27/33":[258],"datasets,":[259],"average":[262],"improvement":[263],"7.2%-22.9%":[265],"against":[266],"state-of-the-art":[268],"methods.":[271],"AVAILABILITY":[272],"AND":[273],"IMPLEMENTATION:":[274],"code":[276],"dataset":[278],"work":[282],"available":[284],"at":[285],"github.com/Yueming-Yin/OLB-AC.":[286]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2024-06-19T00:00:00"}
