{"id":"https://openalex.org/W4399476274","doi":"https://doi.org/10.1093/bioinformatics/btae357","title":"<i>biotextgraph</i>: graphical summarization of functional similarities from textual information","display_name":"<i>biotextgraph</i>: graphical summarization of functional similarities from textual information","publication_year":2024,"publication_date":"2024-06-01","ids":{"openalex":"https://openalex.org/W4399476274","doi":"https://doi.org/10.1093/bioinformatics/btae357","pmid":"https://pubmed.ncbi.nlm.nih.gov/38851878"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae357","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae357/58177447/btae357.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae357/58177447/btae357.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042214127","display_name":"Noriaki Sato","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Noriaki Sato","raw_affiliation_strings":["Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo , Tokyo 108-8639, Japan","Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo , Tokyo 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101711221","display_name":"Yaozhong Zhang","orcid":"https://orcid.org/0000-0001-5598-2521"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yao-zhong Zhang","raw_affiliation_strings":["Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo , Tokyo 108-8639, Japan","Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo , Tokyo 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046801770","display_name":"Zuguang Gu","orcid":"https://orcid.org/0000-0002-7395-8709"},"institutions":[{"id":"https://openalex.org/I4210111460","display_name":"National Center for Tumor Diseases","ror":"https://ror.org/01txwsw02","country_code":"DE","type":"funder","lineage":["https://openalex.org/I4210111460"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Zuguang Gu","raw_affiliation_strings":["Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT) , Heidelberg 69120, Germany","Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT), Heidelberg, 69120, Germany"],"affiliations":[{"raw_affiliation_string":"Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT) , Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I4210111460"]},{"raw_affiliation_string":"Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT), Heidelberg, 69120, Germany","institution_ids":["https://openalex.org/I4210111460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090788230","display_name":"Seiya Imoto","orcid":"https://orcid.org/0000-0002-2989-308X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Seiya Imoto","raw_affiliation_strings":["Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo , Tokyo 108-8639, Japan","Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan"],"affiliations":[{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo , Tokyo 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Division of Health Medical Intelligence, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042214127"],"corresponding_institution_ids":["https://openalex.org/I74801974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08333301,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.851351261138916},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7955701351165771},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.673459529876709},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6388574838638306},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.6198176145553589},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5984636545181274},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5529758930206299},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5406373143196106},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4661242961883545},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.46239861845970154},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.41824597120285034},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26169008016586304},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.231510192155838},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10311698913574219},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08750975131988525}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.851351261138916},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7955701351165771},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.673459529876709},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6388574838638306},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.6198176145553589},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5984636545181274},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5529758930206299},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5406373143196106},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4661242961883545},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.46239861845970154},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.41824597120285034},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26169008016586304},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.231510192155838},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10311698913574219},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08750975131988525},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae357","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae357/58177447/btae357.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38851878","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38851878","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11198732","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11198732","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11198732/pdf/btae357.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae357","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae357/58177447/btae357.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.4099999964237213,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1160716697","display_name":null,"funder_award_id":"KAKENHI [","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1331470871","display_name":"\u751f\u4f53\u819c\u306e\u6d41\u52d5\u7684\u69cb\u9020\u3068\u53d7\u5bb9\u4f53\u306b\u304a\u3051\u308b\u5206\u5b50\u8b58\u5225","funder_award_id":"012104","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2337946962","display_name":null,"funder_award_id":"22H00477","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2676289822","display_name":"\u7a7a\u57df\u4e3b\u50ac\u306e\u7814\u7a76","funder_award_id":"21040","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7752643416","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8440451844","display_name":null,"funder_award_id":"JP21ae0121040","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G908141516","display_name":null,"funder_award_id":"19K18321","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G975188225","display_name":null,"funder_award_id":"KAKENHI","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399476274.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1562973462","https://openalex.org/W1966327575","https://openalex.org/W1989277387","https://openalex.org/W2103017472","https://openalex.org/W2133707124","https://openalex.org/W2137111266","https://openalex.org/W2137450588","https://openalex.org/W2139507631","https://openalex.org/W2159482845","https://openalex.org/W2161793142","https://openalex.org/W2173732482","https://openalex.org/W2179127114","https://openalex.org/W2179344088","https://openalex.org/W2179438025","https://openalex.org/W2344996561","https://openalex.org/W2463118204","https://openalex.org/W2516455020","https://openalex.org/W2540833380","https://openalex.org/W2895553377","https://openalex.org/W2934338946","https://openalex.org/W2952077983","https://openalex.org/W2964438344","https://openalex.org/W2976494531","https://openalex.org/W2977870980","https://openalex.org/W3175752499","https://openalex.org/W3179788429","https://openalex.org/W4210380545","https://openalex.org/W4213414254","https://openalex.org/W4231254854","https://openalex.org/W4280551922","https://openalex.org/W4294216483","https://openalex.org/W4296833397","https://openalex.org/W4386600128","https://openalex.org/W4391654308","https://openalex.org/W4399638148","https://openalex.org/W6728888212","https://openalex.org/W6797786779","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2413568490","https://openalex.org/W1913624564","https://openalex.org/W3130054399","https://openalex.org/W4301062032","https://openalex.org/W2343500026","https://openalex.org/W2319837024","https://openalex.org/W2390627310","https://openalex.org/W2413664130","https://openalex.org/W2051731675","https://openalex.org/W2033159440"],"abstract_inverted_index":{"The":[0],"package,":[1],"documentation,":[2],"and":[3],"web":[4],"server":[5],"are":[6],"available":[7],"at:":[8],"https://github.com/noriakis/biotextgraph.":[9]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2024-06-10T00:00:00"}
