{"id":"https://openalex.org/W4394920313","doi":"https://doi.org/10.1093/bioinformatics/btae179","title":"Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools","display_name":"Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools","publication_year":2024,"publication_date":"2024-03-29","ids":{"openalex":"https://openalex.org/W4394920313","doi":"https://doi.org/10.1093/bioinformatics/btae179","pmid":"https://pubmed.ncbi.nlm.nih.gov/38632080"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae179","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/4/btae179/57341836/btae179.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/4/btae179/57341836/btae179.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000473054","display_name":"Artuur Couckuyt","orcid":"https://orcid.org/0000-0001-7858-6521"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Artuur Couckuyt","raw_affiliation_strings":["Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0001-7858-6521","affiliations":[{"raw_affiliation_string":"Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075407940","display_name":"Benjamin Rombaut","orcid":"https://orcid.org/0000-0002-4022-715X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Benjamin Rombaut","raw_affiliation_strings":["Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-4022-715X","affiliations":[{"raw_affiliation_string":"Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001585713","display_name":"Yvan Saeys","orcid":"https://orcid.org/0000-0002-0415-1506"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yvan Saeys","raw_affiliation_strings":["Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-0415-1506","affiliations":[{"raw_affiliation_string":"Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090919035","display_name":"Sofie Van Gassen","orcid":"https://orcid.org/0000-0002-7119-5330"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sofie Van Gassen","raw_affiliation_strings":["Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-7119-5330","affiliations":[{"raw_affiliation_string":"Data Mining and Modelling for Biomedicine, VIB Center for Inflammation Research , 9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University , 9000 Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.2804,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.88180159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.9088000059127808,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9697784185409546},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7910598516464233},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7434948086738586},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4356614053249359},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.37513333559036255},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21812760829925537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10384157299995422}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9697784185409546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7910598516464233},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7434948086738586},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4356614053249359},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.37513333559036255},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21812760829925537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10384157299995422}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae179","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/4/btae179/57341836/btae179.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38632080","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38632080","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:01HZ2AEJS0FYD68RXQC6QN62G4","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-01HZ2AEJS0FYD68RXQC6QN62G4","pdf_url":"https://biblio.ugent.be/publication/01HZ2AEJS0FYD68RXQC6QN62G4/file/01HZ2AVZQV1X0421PC2F8A5W1Y.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4811","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11052654","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11052654","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11052654/pdf/btae179.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae179","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/4/btae179/57341836/btae179.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1419522426","display_name":"ProFILE - Standardized multi-parameter flow cytometry as tool for early diagnosis, risk assessment and appropriate treatment in primary immunodefiency","funder_award_id":"T000119N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G1667139993","display_name":null,"funder_award_id":"BOF18","funder_id":"https://openalex.org/F4320335227","funder_display_name":"Bijzonder Onderzoeksfonds UGent"},{"id":"https://openalex.org/G3240720480","display_name":null,"funder_award_id":"BOF18-GOA-024","funder_id":"https://openalex.org/F4320335227","funder_display_name":"Bijzonder Onderzoeksfonds UGent"},{"id":"https://openalex.org/G3592102334","display_name":"Computational cytometry techniques for clinical applications","funder_award_id":"1272823N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G8546483809","display_name":null,"funder_award_id":"BOF18-GOA-024","funder_id":"https://openalex.org/F4320322603","funder_display_name":"Universiteit Gent"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null},{"id":"https://openalex.org/F4320335227","display_name":"Bijzonder Onderzoeksfonds UGent","ror":"https://ror.org/00cv9y106"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394920313.pdf","grobid_xml":"https://content.openalex.org/works/W4394920313.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1548779692","https://openalex.org/W1993835819","https://openalex.org/W2075220720","https://openalex.org/W2083612007","https://openalex.org/W2800392236","https://openalex.org/W2951566836","https://openalex.org/W2997055652","https://openalex.org/W3041494167","https://openalex.org/W3121906900","https://openalex.org/W3129866267","https://openalex.org/W3173648257","https://openalex.org/W4210607772","https://openalex.org/W4385444202"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2341492732","https://openalex.org/W2093262417","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W2207495067","https://openalex.org/W1906486629"],"abstract_inverted_index":{"MOTIVATION:":[0],"We":[1],"describe":[2],"a":[3,9],"new":[4],"Python":[5,59],"implementation":[6,17,60],"of":[7],"FlowSOM,":[8],"clustering":[10],"method":[11],"for":[12],"cytometry":[13],"data.":[14],"RESULTS:":[15],"This":[16],"is":[18,61],"faster":[19],"than":[20],"the":[21,44,49],"original":[22,45],"version":[23],"in":[24],"R,":[25],"better":[26],"adapted":[27],"to":[28],"work":[29],"with":[30,36],"single-cell":[31,38],"omics":[32],"data":[33,39],"including":[34],"integration":[35],"current":[37],"structures":[40],"and":[41,51],"includes":[42],"all":[43],"visualizations,":[46],"such":[47],"as":[48],"star":[50],"pie":[52],"plot.":[53],"AVAILABILITY":[54],"AND":[55],"IMPLEMENTATION:":[56],"The":[57],"FlowSOM":[58],"freely":[62],"available":[63],"on":[64],"GitHub:":[65],"https://github.com/saeyslab/FlowSOM_Python.":[66]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}