{"id":"https://openalex.org/W4393407391","doi":"https://doi.org/10.1093/bioinformatics/btae171","title":"3Dmapper: a command line tool for BioBank-scale mapping of variants to protein structures","display_name":"3Dmapper: a command line tool for BioBank-scale mapping of variants to protein structures","publication_year":2024,"publication_date":"2024-03-29","ids":{"openalex":"https://openalex.org/W4393407391","doi":"https://doi.org/10.1093/bioinformatics/btae171","pmid":"https://pubmed.ncbi.nlm.nih.gov/38565273"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae171","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae171/57141513/btae171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae171/57141513/btae171.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005706247","display_name":"Victoria Ruiz\u2010Serra","orcid":"https://orcid.org/0000-0003-3991-0514"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210089592","display_name":"Josep Carreras Leukaemia Research Institute","ror":"https://ror.org/00btzwk36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089592","https://openalex.org/I4210144824","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Victoria Ruiz-Serra","raw_affiliation_strings":["Barcelona Supercomputing Center (BSC)","Josep Carreras Leukaemia Research Institute (IJC) , Badalona 08916, Spain"],"raw_orcid":"https://orcid.org/0000-0003-3991-0514","affiliations":[{"raw_affiliation_string":"Barcelona Supercomputing Center (BSC)","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"Josep Carreras Leukaemia Research Institute (IJC) , Badalona 08916, Spain","institution_ids":["https://openalex.org/I4210089592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054443624","display_name":"Samuel Valentini","orcid":"https://orcid.org/0000-0003-3656-8274"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Samuel Valentini","raw_affiliation_strings":["Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento , Trento 38123, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento , Trento 38123, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043081449","display_name":"Sergi Madro\u00f1ero","orcid":"https://orcid.org/0000-0001-8852-2062"},"institutions":[{"id":"https://openalex.org/I4210089592","display_name":"Josep Carreras Leukaemia Research Institute","ror":"https://ror.org/00btzwk36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089592","https://openalex.org/I4210144824","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sergi Madro\u00f1ero","raw_affiliation_strings":["Josep Carreras Leukaemia Research Institute (IJC) , Badalona 08916, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Josep Carreras Leukaemia Research Institute (IJC) , Badalona 08916, Spain","institution_ids":["https://openalex.org/I4210089592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Barcelona Supercomputing Center (BSC)","Instituci\u00f3 Catalana de Recerca Avan\u00e7ada (ICREA)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Barcelona Supercomputing Center (BSC)","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"Instituci\u00f3 Catalana de Recerca Avan\u00e7ada (ICREA)","institution_ids":["https://openalex.org/I11932220"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080761791","display_name":"Eduard Porta\u2010Pardo","orcid":"https://orcid.org/0000-0001-7900-4239"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210089592","display_name":"Josep Carreras Leukaemia Research Institute","ror":"https://ror.org/00btzwk36","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089592","https://openalex.org/I4210144824","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Eduard Porta-Pardo","raw_affiliation_strings":["Barcelona Supercomputing Center (BSC)","Josep Carreras Leukaemia Research Institute (IJC) , Badalona 08916, Spain"],"raw_orcid":"https://orcid.org/0000-0001-7900-4239","affiliations":[{"raw_affiliation_string":"Barcelona Supercomputing Center (BSC)","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"Josep Carreras Leukaemia Research Institute (IJC) , Badalona 08916, Spain","institution_ids":["https://openalex.org/I4210089592"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005706247","https://openalex.org/A5080761791"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210089592","https://openalex.org/I9617848"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05084057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7426000237464905,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.7426000237464905,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1282999962568283,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.04500000178813934,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.8850657939910889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6005704402923584},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5499897599220276},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5113648772239685},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.47993332147598267},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25177884101867676},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25021204352378845},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.10848042368888855},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.10802432894706726},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08965498208999634}],"concepts":[{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.8850657939910889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6005704402923584},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5499897599220276},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5113648772239685},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.47993332147598267},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25177884101867676},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25021204352378845},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.10848042368888855},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.10802432894706726},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08965498208999634},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae171","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae171/57141513/btae171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38565273","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38565273","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ddd.uab.cat:301964","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/301964","pdf_url":"https://ddd.uab.cat/pub/artpub/2024/301964/301964.pdf","source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11018535","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11018535","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11018535/pdf/btae171.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae171","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae171/57141513/btae171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322121","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230"},{"id":"https://openalex.org/F4320323868","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393407391.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1965379872","https://openalex.org/W2061596350","https://openalex.org/W2130479394","https://openalex.org/W2131581981","https://openalex.org/W2134499258","https://openalex.org/W2151684398","https://openalex.org/W2163953557","https://openalex.org/W2464488701","https://openalex.org/W2734356283","https://openalex.org/W2770026599","https://openalex.org/W2796408191","https://openalex.org/W2915300622","https://openalex.org/W3015964336","https://openalex.org/W3029661147","https://openalex.org/W3046468150","https://openalex.org/W3128572085","https://openalex.org/W3163911339","https://openalex.org/W3177828909","https://openalex.org/W4220824576","https://openalex.org/W4226027101","https://openalex.org/W4230096730","https://openalex.org/W4309506674","https://openalex.org/W4317802023","https://openalex.org/W4385796110"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W3113746618","https://openalex.org/W4226051228","https://openalex.org/W3017691140","https://openalex.org/W2024651825","https://openalex.org/W4384208482","https://openalex.org/W4244742767","https://openalex.org/W2470939431","https://openalex.org/W4226156868"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"interpretation":[2,25],"of":[3,13,75],"genomic":[4,85],"data":[5,49,86],"is":[6,39,120],"crucial":[7],"to":[8,30,37,46,63,70,113],"understand":[9],"the":[10,52],"molecular":[11],"mechanisms":[12],"biological":[14],"processes.":[15],"Protein":[16],"structures":[17],"play":[18],"a":[19,40,96,117],"vital":[20],"role":[21],"in":[22,48,101],"facilitating":[23],"this":[24,91],"by":[26],"providing":[27,116],"functional":[28],"context":[29],"genetic":[31],"coding":[32],"variants.":[33],"However,":[34,73],"mapping":[35],"genes":[36],"proteins":[38],"tedious":[41],"and":[42,58,68,80,103,111,123],"error-prone":[43],"task":[44],"due":[45],"inconsistencies":[47],"formats.":[50],"Over":[51],"past":[53],"two":[54],"decades,":[55],"numerous":[56],"tools":[57,77],"databases":[59],"have":[60],"been":[61],"developed":[62,100],"automatically":[64],"map":[65],"annotated":[66,108],"positions":[67,110],"variants":[69,112],"protein":[71,109,114],"structures.":[72],"most":[74],"these":[76],"are":[78],"web-based":[79],"not":[81],"well-suited":[82],"for":[83],"large-scale":[84],"analysis.":[87],"RESULTS:":[88],"To":[89],"address":[90],"issue,":[92],"we":[93],"introduce":[94],"3Dmapper,":[95],"stand-alone":[97],"command-line":[98],"tool":[99],"Python":[102],"R.":[104],"It":[105],"systematically":[106],"maps":[107],"structures,":[115],"solution":[118],"that":[119],"both":[121],"efficient":[122],"reliable.":[124],"AVAILABILITY":[125],"AND":[126],"IMPLEMENTATION:":[127],"https://github.com/vicruiser/3Dmapper.":[128]},"counts_by_year":[],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}