{"id":"https://openalex.org/W4393094733","doi":"https://doi.org/10.1093/bioinformatics/btae163","title":"Advancing entity recognition in biomedicine via instruction tuning of large language models","display_name":"Advancing entity recognition in biomedicine via instruction tuning of large language models","publication_year":2024,"publication_date":"2024-03-21","ids":{"openalex":"https://openalex.org/W4393094733","doi":"https://doi.org/10.1093/bioinformatics/btae163","pmid":"https://pubmed.ncbi.nlm.nih.gov/38514400"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae163","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae163","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae163/57056267/btae163.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae163/57056267/btae163.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080240865","display_name":"Vipina K. Keloth","orcid":"https://orcid.org/0000-0001-6919-1122"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vipina K Keloth","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100715220","display_name":"Yan Hu","orcid":"https://orcid.org/0009-0008-2413-5918"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Hu","raw_affiliation_strings":["McWilliams School of Biomedical Informatics, University of Texas Health Science at Houston , Houston, TX-77030, United States"],"affiliations":[{"raw_affiliation_string":"McWilliams School of Biomedical Informatics, University of Texas Health Science at Houston , Houston, TX-77030, United States","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101868563","display_name":"Qianqian Xie","orcid":"https://orcid.org/0000-0002-9588-7454"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianqian Xie","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036053506","display_name":"Xueqing Peng","orcid":"https://orcid.org/0000-0002-3296-3472"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xueqing Peng","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322712","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-5344-1884"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101662002","display_name":"Andrew Zheng","orcid":"https://orcid.org/0009-0000-3201-4456"},"institutions":[{"id":"https://openalex.org/I4210149691","display_name":"William P. Clements Jr. University Hospital","ror":"https://ror.org/04qfvk625","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210149691"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Zheng","raw_affiliation_strings":["William P. Clements High School , Sugar Land, TX-77479, United States"],"affiliations":[{"raw_affiliation_string":"William P. Clements High School , Sugar Land, TX-77479, United States","institution_ids":["https://openalex.org/I4210149691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111152577","display_name":"Melih Selek","orcid":null},"institutions":[{"id":"https://openalex.org/I201193091","display_name":"Stephen F. Austin State University","ror":"https://ror.org/00hq0e369","country_code":"US","type":"education","lineage":["https://openalex.org/I201193091"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melih Selek","raw_affiliation_strings":["Stephen F. Austin High School , Sugar Land, TX-77498, United States"],"affiliations":[{"raw_affiliation_string":"Stephen F. Austin High School , Sugar Land, TX-77498, United States","institution_ids":["https://openalex.org/I201193091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024997718","display_name":"Kalpana Raja","orcid":"https://orcid.org/0000-0002-3156-4197"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kalpana Raja","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058918482","display_name":"Chih-Hsuan Wei","orcid":"https://orcid.org/0000-0001-5094-7321"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chih Hsuan Wei","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100611571","display_name":"Qiao Jin","orcid":"https://orcid.org/0000-0002-1268-7239"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiao Jin","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042874172","display_name":"Qingyu Chen","orcid":"https://orcid.org/0000-0002-6036-1516"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qingyu Chen","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States","Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, MD-20894, United States","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Xu","raw_affiliation_strings":["Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States"],"affiliations":[{"raw_affiliation_string":"Section of Biomedical Informatics and Data Science, School of Medicine, Yale University , New Haven, CT-06510, United States","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5080240865"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":29.7508,"has_fulltext":true,"cited_by_count":88,"citation_normalized_percentile":{"value":0.99773572,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"40","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.7486018538475037},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7177324891090393},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.607657253742218},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6053609848022461},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.5618616938591003},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.54363614320755},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5302940011024475},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"Sequence labeling","score":0.5210501551628113},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4771561026573181},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.47297540307044983},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4450412094593048},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4260501265525818},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.14809641242027283},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.1275838017463684},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07960197329521179},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07139459252357483}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.7486018538475037},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7177324891090393},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.607657253742218},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6053609848022461},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.5618616938591003},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.54363614320755},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5302940011024475},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.5210501551628113},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4771561026573181},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.47297540307044983},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4450412094593048},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4260501265525818},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.14809641242027283},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.1275838017463684},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07960197329521179},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07139459252357483},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002161","descriptor_name":"Camelids, New World","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002161","descriptor_name":"Camelids, New World","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002161","descriptor_name":"Camelids, New World","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002161","descriptor_name":"Camelids, New World","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002161","descriptor_name":"Camelids, New World","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002161","descriptor_name":"Camelids, New World","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae163","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae163","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae163/57056267/btae163.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38514400","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38514400","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11001490","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11001490","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11001490/pdf/btae163.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae163","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae163","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae163/57056267/btae163.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1110151009","display_name":null,"funder_award_id":"R01LM013519","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G1729030118","display_name":null,"funder_award_id":"R01AG078154","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6148477407","display_name":null,"funder_award_id":"1K99LM01402","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8720705388","display_name":null,"funder_award_id":"1K99LM01402","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8770653528","display_name":null,"funder_award_id":"R01LM013519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393094733.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1592053870","https://openalex.org/W2122377078","https://openalex.org/W2154142897","https://openalex.org/W2159640576","https://openalex.org/W2169099542","https://openalex.org/W2169918010","https://openalex.org/W2346452181","https://openalex.org/W2743028754","https://openalex.org/W2800535933","https://openalex.org/W2911489562","https://openalex.org/W2954075147","https://openalex.org/W2963339489","https://openalex.org/W2997394673","https://openalex.org/W3046375318","https://openalex.org/W3080945644","https://openalex.org/W3132069728","https://openalex.org/W3156936474","https://openalex.org/W3197984051","https://openalex.org/W4206192903","https://openalex.org/W4223621129","https://openalex.org/W4281557260","https://openalex.org/W4294763143","https://openalex.org/W4311288223","https://openalex.org/W4319460874","https://openalex.org/W4376274483","https://openalex.org/W4384662964","https://openalex.org/W4391292768","https://openalex.org/W6635275303","https://openalex.org/W6838865847"],"related_works":["https://openalex.org/W2251332378","https://openalex.org/W2134429551","https://openalex.org/W3004288456","https://openalex.org/W2548624545","https://openalex.org/W2530283981","https://openalex.org/W2589080577","https://openalex.org/W3161409692","https://openalex.org/W189110383","https://openalex.org/W2027233318","https://openalex.org/W4390306502"],"abstract_inverted_index":{"Datasets":[0],"and":[1],"other":[2],"resources":[3],"are":[4],"available":[5],"at":[6],"https://github.com/BIDS-Xu-Lab/BioNER-LLaMA.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":60},{"year":2024,"cited_by_count":18}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
