{"id":"https://openalex.org/W4393055192","doi":"https://doi.org/10.1093/bioinformatics/btae157","title":"TemStaPro: protein thermostability prediction using sequence representations from protein language models","display_name":"TemStaPro: protein thermostability prediction using sequence representations from protein language models","publication_year":2024,"publication_date":"2024-03-20","ids":{"openalex":"https://openalex.org/W4393055192","doi":"https://doi.org/10.1093/bioinformatics/btae157","pmid":"https://pubmed.ncbi.nlm.nih.gov/38507682"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae157","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae157","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae157/57037971/btae157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae157/57037971/btae157.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081913637","display_name":"Ieva Pud\u017eiuvelyt\u0117","orcid":"https://orcid.org/0009-0004-0600-590X"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":true,"raw_author_name":"Ieva Pud\u017eiuvelyt\u0117","raw_affiliation_strings":["Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania","Institute of Computer Science, Faculty of Mathematics and Informatics, Vilnius University , LT-08303 Vilnius, Lithuania","Institute of Computer Science, Faculty of Mathematics and Informatics, Vilnius University, Didlaukio st. 47, Vilnius, LT-08303, Lithuania"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]},{"raw_affiliation_string":"Institute of Computer Science, Faculty of Mathematics and Informatics, Vilnius University , LT-08303 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]},{"raw_affiliation_string":"Institute of Computer Science, Faculty of Mathematics and Informatics, Vilnius University, Didlaukio st. 47, Vilnius, LT-08303, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079599346","display_name":"Kliment Olechnovi\u010d","orcid":"https://orcid.org/0000-0003-4918-9505"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Kliment Olechnovi\u010d","raw_affiliation_strings":["Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004253662","display_name":"Egl\u0117 Godliauskait\u0117","orcid":"https://orcid.org/0009-0001-7804-5431"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Egle Godliauskaite","raw_affiliation_strings":["CasZyme , LT-10257 Vilnius, Lithuania"],"affiliations":[{"raw_affiliation_string":"CasZyme , LT-10257 Vilnius, Lithuania","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048651081","display_name":"Kristupas Sermokas","orcid":"https://orcid.org/0009-0004-0842-1800"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kristupas Sermokas","raw_affiliation_strings":["CasZyme , LT-10257 Vilnius, Lithuania"],"affiliations":[{"raw_affiliation_string":"CasZyme , LT-10257 Vilnius, Lithuania","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046484162","display_name":"Tomas Urbaitis","orcid":"https://orcid.org/0009-0008-2847-4386"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tomas Urbaitis","raw_affiliation_strings":["CasZyme , LT-10257 Vilnius, Lithuania"],"affiliations":[{"raw_affiliation_string":"CasZyme , LT-10257 Vilnius, Lithuania","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080723359","display_name":"Giedrius Gasi\u016bnas","orcid":"https://orcid.org/0000-0003-2509-9054"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Giedrius Gasiunas","raw_affiliation_strings":["CasZyme , LT-10257 Vilnius, Lithuania","Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania"],"affiliations":[{"raw_affiliation_string":"CasZyme , LT-10257 Vilnius, Lithuania","institution_ids":[]},{"raw_affiliation_string":"Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071041670","display_name":"Darius Kazlauskas","orcid":"https://orcid.org/0000-0001-6135-8549"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Darius Kazlauskas","raw_affiliation_strings":["Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Life Sciences Center, Vilnius University , LT-10257 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5081913637"],"corresponding_institution_ids":["https://openalex.org/I173212132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":10.3038,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.98947472,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"40","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/thermostability","display_name":"Thermostability","score":0.9887688159942627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6153485774993896},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5022454261779785},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4822445809841156},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4809917211532593},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4480111598968506},{"id":"https://openalex.org/keywords/protein-stability","display_name":"Protein stability","score":0.4444333612918854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3411725163459778},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.23125341534614563},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2299625277519226},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10264721512794495}],"concepts":[{"id":"https://openalex.org/C2781216036","wikidata":"https://www.wikidata.org/wiki/Q902494","display_name":"Thermostability","level":3,"score":0.9887688159942627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6153485774993896},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5022454261779785},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4822445809841156},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4809917211532593},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4480111598968506},{"id":"https://openalex.org/C2988375501","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein stability","level":2,"score":0.4444333612918854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3411725163459778},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.23125341534614563},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2299625277519226},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10264721512794495},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae157","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae157","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae157/57037971/btae157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38507682","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38507682","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11001493","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11001493","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11001493/pdf/btae157.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae157","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae157","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae157/57037971/btae157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G3875748329","display_name":null,"funder_award_id":"European Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6122222817","display_name":null,"funder_award_id":"COVID-19","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7566663631","display_name":null,"funder_award_id":"13.1.1-LMT-K-718-05-0021","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8538941428","display_name":null,"funder_award_id":"Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G922455614","display_name":null,"funder_award_id":"LMTLT","funder_id":"https://openalex.org/F4320322689","funder_display_name":"Lietuvos Mokslo Taryba"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322689","display_name":"Lietuvos Mokslo Taryba","ror":"https://ror.org/02gs16m83"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393055192.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W2047444359","https://openalex.org/W2076048958","https://openalex.org/W2096525273","https://openalex.org/W2102626860","https://openalex.org/W2120322316","https://openalex.org/W2138122982","https://openalex.org/W2170747616","https://openalex.org/W2464663739","https://openalex.org/W2566705644","https://openalex.org/W2795641220","https://openalex.org/W2914405292","https://openalex.org/W2949986034","https://openalex.org/W2952813308","https://openalex.org/W3022971848","https://openalex.org/W3096886392","https://openalex.org/W3146944767","https://openalex.org/W3157679920","https://openalex.org/W3177500196","https://openalex.org/W3198344223","https://openalex.org/W3203405076","https://openalex.org/W4200003503","https://openalex.org/W4205440119","https://openalex.org/W4212965593","https://openalex.org/W4220656942","https://openalex.org/W4225264859","https://openalex.org/W4242765109","https://openalex.org/W4281921162","https://openalex.org/W4283588627","https://openalex.org/W4289274885","https://openalex.org/W4290647400","https://openalex.org/W4293659799","https://openalex.org/W4306974311","https://openalex.org/W4309305993","https://openalex.org/W4310957810","https://openalex.org/W4311180794","https://openalex.org/W4317931114","https://openalex.org/W4321597590","https://openalex.org/W4327550249","https://openalex.org/W4362606347","https://openalex.org/W4387516740"],"related_works":["https://openalex.org/W2005824433","https://openalex.org/W2048537773","https://openalex.org/W2461736353","https://openalex.org/W2057033137","https://openalex.org/W1633704547","https://openalex.org/W2057422942","https://openalex.org/W41821117","https://openalex.org/W2091714383","https://openalex.org/W2143994417","https://openalex.org/W2095784700"],"abstract_inverted_index":{"TemStaPro":[0],"software":[1],"and":[2,11],"the":[3],"related":[4],"data":[5],"are":[6],"freely":[7],"available":[8],"from":[9],"https://github.com/ievapudz/TemStaPro":[10],"https://doi.org/10.5281/zenodo.7743637.":[12]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
