{"id":"https://openalex.org/W4392344588","doi":"https://doi.org/10.1093/bioinformatics/btae123","title":"GPro: generative AI-empowered toolkit for promoter design","display_name":"GPro: generative AI-empowered toolkit for promoter design","publication_year":2024,"publication_date":"2024-03-01","ids":{"openalex":"https://openalex.org/W4392344588","doi":"https://doi.org/10.1093/bioinformatics/btae123","pmid":"https://pubmed.ncbi.nlm.nih.gov/38429953"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae123","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae123","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae123/56819141/btae123.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae123/56819141/btae123.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100645299","display_name":"Haochen Wang","orcid":"https://orcid.org/0000-0003-1191-6682"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haochen Wang","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","Department of Automation, Tsinghua University , Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China"],"raw_orcid":"https://orcid.org/0000-0003-1191-6682","affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101774809","display_name":"Qixiu Du","orcid":"https://orcid.org/0009-0008-8351-618X"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qixiu Du","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","Department of Automation, Tsinghua University , Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China"],"raw_orcid":"https://orcid.org/0009-0008-8351-618X","affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100423447","display_name":"Ye Wang","orcid":"https://orcid.org/0000-0002-2608-368X"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye Wang","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","Department of Automation, Tsinghua University , Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024324107","display_name":"Hanwen Xu","orcid":"https://orcid.org/0000-0003-0361-6647"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanwen Xu","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","Department of Automation, Tsinghua University , Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100625375","display_name":"Wei Zheng","orcid":"https://orcid.org/0000-0003-2060-7486"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Wei","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","Department of Automation, Tsinghua University , Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China"],"raw_orcid":"https://orcid.org/0000-0003-2060-7486","affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008093795","display_name":"Xiaowo Wang","orcid":"https://orcid.org/0000-0003-2965-8036"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaowo Wang","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","Department of Automation, Tsinghua University , Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China"],"raw_orcid":"https://orcid.org/0000-0003-2965-8036","affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University , Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Bioinformatics Division, Beijing National Research Center for Information Science and Technology, Department of Automation, Tsinghua University, Beijing, 100084, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008093795"],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.8129,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.94000039,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"40","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12856","display_name":"Transgenic Plants and Applications","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7319778800010681},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6027765274047852},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5965527296066284},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5758975744247437},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5323524475097656},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4986748695373535},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4967830777168274},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.44294944405555725},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3349848985671997},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3143744170665741},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2519146800041199}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7319778800010681},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6027765274047852},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5965527296066284},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5758975744247437},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5323524475097656},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4986748695373535},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4967830777168274},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.44294944405555725},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3349848985671997},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3143744170665741},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2519146800041199},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae123","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae123","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae123/56819141/btae123.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38429953","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38429953","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10937896","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10937896","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10937896/pdf/btae123.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae123","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae123","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae123/56819141/btae123.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3301431121","display_name":null,"funder_award_id":"62250007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6299841869","display_name":null,"funder_award_id":"Z230015","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"},{"id":"https://openalex.org/G8025262204","display_name":null,"funder_award_id":"62225307","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322392","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549"},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392344588.pdf","grobid_xml":"https://content.openalex.org/works/W4392344588.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2021099440","https://openalex.org/W2913423296","https://openalex.org/W3023962428","https://openalex.org/W3027404681","https://openalex.org/W3105448862","https://openalex.org/W4221128536","https://openalex.org/W4293569212","https://openalex.org/W4381547856","https://openalex.org/W4387449933","https://openalex.org/W4389613185"],"related_works":["https://openalex.org/W4309247532","https://openalex.org/W2604408404","https://openalex.org/W3096946169","https://openalex.org/W2113128227","https://openalex.org/W2144610372","https://openalex.org/W4312114021","https://openalex.org/W4311938462","https://openalex.org/W2121840477","https://openalex.org/W2515936044","https://openalex.org/W3123068371"],"abstract_inverted_index":{"MOTIVATION:":[0],"Promoters":[1],"with":[2,21],"desirable":[3],"properties":[4],"are":[5,104],"crucial":[6],"in":[7,16],"biotechnological":[8],"applications.":[9],"Generative":[10],"AI":[11],"(GenAI)":[12],"has":[13],"demonstrated":[14],"potential":[15],"creating":[17],"novel":[18],"synthetic":[19],"promoters":[20,56],"significantly":[22],"enhanced":[23],"functionality.":[24],"However,":[25],"these":[26,41],"methods'":[27],"reliance":[28],"on":[29,172],"various":[30],"programming":[31],"frameworks":[32],"and":[33,99,139,147,177,180],"specific":[34],"task-oriented":[35],"contexts":[36],"limits":[37],"their":[38,58],"flexibilities.":[39],"Overcoming":[40],"limitations":[42],"is":[43,155,170,181],"essential":[44,92],"for":[45,57,68,82,135,168,174,183],"researchers":[46],"to":[47,54,106,118,144],"fully":[48],"leverage":[49],"the":[50,142,162],"power":[51],"of":[52,78,122,132],"GenAI":[53],"design":[55,94,110,137],"tasks.":[59],"RESULTS:":[60],"Here,":[61],"we":[62],"introduce":[63],"GPro":[64,154,169],"(Generative":[65],"AI-empowered":[66],"toolkit":[67,73,86],"promoter":[69,83,93,109],"design),":[70],"a":[71,76,88,119,130],"user-friendly":[72,113],"that":[74],"integrates":[75],"collection":[77],"cutting-edge":[79],"GenAI-empowered":[80],"approaches":[81],"design.":[84],"This":[85],"provides":[87],"standardized":[89],"pipeline":[90],"covering":[91],"processes,":[95],"including":[96,124],"training,":[97],"optimization,":[98],"evaluation.":[100],"Several":[101],"detailed":[102],"demos":[103],"provided":[105],"reproduce":[107],"state-of-the-art":[108],"pipelines.":[111,150],"GPro's":[112],"interface":[114],"makes":[115],"it":[116],"accessible":[117],"wide":[120],"range":[121],"users":[123,141],"non-AI":[125],"experts.":[126],"It":[127],"also":[128],"offers":[129],"variety":[131],"optional":[133],"algorithms":[134],"each":[136],"process,":[138],"gives":[140],"flexibility":[143],"compare":[145],"methods":[146],"create":[148],"customized":[149],"AVAILABILITY":[151],"AND":[152],"IMPLEMENTATION:":[153],"released":[156],"as":[157],"an":[158],"open-source":[159],"software":[160],"under":[161],"MIT":[163],"license.":[164],"The":[165],"source":[166],"code":[167],"available":[171,182],"GitHub":[173],"Linux,":[175],"macOS,":[176],"Windows:":[178],"https://github.com/WangLabTHU/GPro,":[179],"download":[184],"via":[185],"Zenodo":[186],"repository":[187],"at":[188],"https://zenodo.org/doi/10.5281/zenodo.10681733.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5}],"updated_date":"2026-06-20T22:02:38.213706","created_date":"2024-03-05T00:00:00"}
