{"id":"https://openalex.org/W4392163362","doi":"https://doi.org/10.1093/bioinformatics/btae108","title":"Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification","display_name":"Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification","publication_year":2024,"publication_date":"2024-02-24","ids":{"openalex":"https://openalex.org/W4392163362","doi":"https://doi.org/10.1093/bioinformatics/btae108","pmid":"https://pubmed.ncbi.nlm.nih.gov/38407280"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae108","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae108/56756173/btae108.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae108/56756173/btae108.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094003884","display_name":"Kristofer Sand\u00e5s","orcid":null},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Kristofer Sand\u00e5s","raw_affiliation_strings":["Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden"],"raw_orcid":"https://orcid.org/0009-0006-0949-7254","affiliations":[{"raw_affiliation_string":"Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden","institution_ids":["https://openalex.org/I1291458624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060340157","display_name":"Jacob Lewerentz","orcid":"https://orcid.org/0000-0001-5013-9498"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jacob Lewerentz","raw_affiliation_strings":["Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden","institution_ids":["https://openalex.org/I1291458624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069457732","display_name":"Edvin Karlsson","orcid":"https://orcid.org/0000-0002-1260-769X"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Edvin Karlsson","raw_affiliation_strings":["Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden","institution_ids":["https://openalex.org/I1291458624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076494963","display_name":"Linda Karlsson","orcid":"https://orcid.org/0000-0003-3317-7550"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Linda Karlsson","raw_affiliation_strings":["Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden","institution_ids":["https://openalex.org/I1291458624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033867338","display_name":"David Sundell","orcid":"https://orcid.org/0000-0002-6269-0217"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"David Sundell","raw_affiliation_strings":["Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-6269-0217","affiliations":[{"raw_affiliation_string":"Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden","institution_ids":["https://openalex.org/I1291458624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094003885","display_name":"Kotryna Simonyt\u00e9-Sj\u00f6din","orcid":null},"institutions":[{"id":"https://openalex.org/I90267481","display_name":"Ume\u00e5 University","ror":"https://ror.org/05kb8h459","country_code":"SE","type":"education","lineage":["https://openalex.org/I90267481"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Kotryna Simonyt\u00e9-Sj\u00f6din","raw_affiliation_strings":["Pediatrics, Department of Clinical Sciences, Ume\u00e5 University , Ume\u00e5 901 87, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pediatrics, Department of Clinical Sciences, Ume\u00e5 University , Ume\u00e5 901 87, Sweden","institution_ids":["https://openalex.org/I90267481"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034528790","display_name":"Andreas Sj\u00f6din","orcid":"https://orcid.org/0000-0001-5350-4219"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Andreas Sj\u00f6din","raw_affiliation_strings":["Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden"],"raw_orcid":"https://orcid.org/0000-0001-5350-4219","affiliations":[{"raw_affiliation_string":"Division of CBRN Defence and Security, Swedish Defence Research Agency (FOI) , Ume\u00e5 906 21, Sweden","institution_ids":["https://openalex.org/I1291458624"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034528790"],"corresponding_institution_ids":["https://openalex.org/I1291458624"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3801,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.58042004,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"40","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5508000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5508000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10506","display_name":"Aquaculture disease management and microbiota","score":0.07020000368356705,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.05290000140666962,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8178808689117432},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.8125287890434265},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.6130937933921814},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.5367240905761719},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47419673204421997},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3971901535987854},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35619252920150757},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25242364406585693},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.13590577244758606},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.11605829000473022},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11447462439537048},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06408601999282837},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05819404125213623}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8178808689117432},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.8125287890434265},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.6130937933921814},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.5367240905761719},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47419673204421997},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3971901535987854},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35619252920150757},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25242364406585693},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.13590577244758606},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.11605829000473022},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11447462439537048},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06408601999282837},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05819404125213623}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae108","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae108/56756173/btae108.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38407280","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38407280","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:DiVA.org:umu-223056","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-223056","pdf_url":"https://umu.diva-portal.org/smash/get/diva2:1853220/FULLTEXT01","source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10924712","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10924712","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10924712/pdf/btae108.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae108","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae108/56756173/btae108.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392163362.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1843776586","https://openalex.org/W2040412593","https://openalex.org/W2055043387","https://openalex.org/W2085926377","https://openalex.org/W2116617401","https://openalex.org/W2140466960","https://openalex.org/W2754579667","https://openalex.org/W2765745983","https://openalex.org/W2893909145","https://openalex.org/W2951912016","https://openalex.org/W2977180444","https://openalex.org/W2990618091","https://openalex.org/W3086004065","https://openalex.org/W3122109253","https://openalex.org/W4210644165","https://openalex.org/W4297498241"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W4255657129"],"abstract_inverted_index":{"SUMMARY:":[0],"Nanometa":[1,68,121],"Live":[2,69,122],"presents":[3],"a":[4,59,94,127],"user-friendly":[5],"interface":[6,32,63],"designed":[7],"for":[8,33,64,73],"real-time":[9],"metagenomic":[10,39],"data":[11,40,139],"analysis":[12],"and":[13,21,30,36,58,100,116,153,166,173],"pathogen":[14],"identification":[15],"utilizing":[16],"Oxford":[17],"Nanopore":[18],"Technologies'":[19],"MinION":[20],"Flongle":[22],"flow":[23],"cells.":[24],"It":[25,92,160],"offers":[26],"an":[27],"efficient":[28],"workflow":[29],"graphical":[31,61],"the":[34,102,132,138,148],"visualization":[35],"interpretation":[37],"of":[38,54,97,104,110,170],"as":[41,126],"it":[42,87,154],"is":[43,70,144,155],"being":[44],"generated.":[45],"Key":[46],"features":[47],"include":[48],"automated":[49],"BLAST":[50],"validation,":[51],"streamlined":[52],"handling":[53,137],"custom":[55],"Kraken2":[56],"databases,":[57],"simplified":[60],"user":[62,66],"enhanced":[65],"experience.":[67],"particularly":[71],"notable":[72],"its":[74],"capability":[75],"to":[76,113],"run":[77],"without":[78],"constant":[79],"internet":[80],"or":[81,107],"server":[82],"access":[83],"once":[84],"installed,":[85],"setting":[86],"apart":[88],"from":[89],"similar":[90],"tools.":[91],"provides":[93],"comprehensive":[95],"view":[96],"taxonomic":[98],"composition":[99],"facilitates":[101],"detection":[103],"user-defined":[105],"pathogens":[106],"other":[108],"species":[109],"interest,":[111],"catering":[112],"both":[114],"researchers":[115],"clinicians.":[117],"AVAILABILITY":[118],"AND":[119],"IMPLEMENTATION:":[120],"has":[123],"been":[124],"implemented":[125],"local":[128],"web":[129],"application":[130],"using":[131,158],"Dash":[133],"framework":[134],"with":[135],"Snakemake":[136],"processing.":[140],"The":[141],"source":[142],"code":[143],"freely":[145],"accessible":[146],"on":[147],"GitHub":[149],"repository":[150],"at":[151],"https://github.com/FOI-Bioinformatics/nanometa_live":[152],"easily":[156],"installable":[157],"Bioconda.":[159],"includes":[161],"containerization":[162],"support":[163],"via":[164],"Docker":[165],"Singularity,":[167],"ensuring":[168],"ease":[169],"use,":[171],"reproducibility,":[172],"portability.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
