{"id":"https://openalex.org/W4392533279","doi":"https://doi.org/10.1093/bioinformatics/btae096","title":"Selection among site-dependent structurally constrained substitution models of protein evolution by approximate Bayesian computation","display_name":"Selection among site-dependent structurally constrained substitution models of protein evolution by approximate Bayesian computation","publication_year":2024,"publication_date":"2024-02-19","ids":{"openalex":"https://openalex.org/W4392533279","doi":"https://doi.org/10.1093/bioinformatics/btae096","pmid":"https://pubmed.ncbi.nlm.nih.gov/38374231"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae096","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae096/56850937/btae096.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae096/56850937/btae096.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048102085","display_name":"David Ferreiro","orcid":"https://orcid.org/0000-0003-0757-7702"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"David Ferreiro","raw_affiliation_strings":["CINBIO, Universidade de Vigo , 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, Universidade de Vigo , 36310 Vigo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINBIO, Universidade de Vigo , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, Universidade de Vigo , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081367699","display_name":"Catarina Branco","orcid":"https://orcid.org/0000-0002-6669-2519"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Catarina Branco","raw_affiliation_strings":["CINBIO, Universidade de Vigo , 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, Universidade de Vigo , 36310 Vigo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINBIO, Universidade de Vigo , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, Universidade de Vigo , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037761662","display_name":"Miguel Arenas","orcid":"https://orcid.org/0000-0002-0516-2717"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Arenas","raw_affiliation_strings":["CINBIO, Universidade de Vigo , 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, Universidade de Vigo , 36310 Vigo, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0516-2717","affiliations":[{"raw_affiliation_string":"CINBIO, Universidade de Vigo , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, Universidade de Vigo , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I6289922"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.4231,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.94956892,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"40","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12056","display_name":"Markov Chains and Monte Carlo Methods","score":0.6201000213623047,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12056","display_name":"Markov Chains and Monte Carlo Methods","score":0.6201000213623047,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0731000006198883,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.04340000078082085,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.7765501141548157},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7104750871658325},{"id":"https://openalex.org/keywords/approximate-bayesian-computation","display_name":"Approximate Bayesian computation","score":0.6846994161605835},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6510364413261414},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5733723640441895},{"id":"https://openalex.org/keywords/model-selection","display_name":"Model selection","score":0.5341668725013733},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.506086528301239},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36269208788871765},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3402036428451538},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.24990606307983398},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24526116251945496},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.22161397337913513}],"concepts":[{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.7765501141548157},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7104750871658325},{"id":"https://openalex.org/C2779377595","wikidata":"https://www.wikidata.org/wiki/Q21045424","display_name":"Approximate Bayesian computation","level":3,"score":0.6846994161605835},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6510364413261414},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5733723640441895},{"id":"https://openalex.org/C93959086","wikidata":"https://www.wikidata.org/wiki/Q6888345","display_name":"Model selection","level":2,"score":0.5341668725013733},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.506086528301239},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36269208788871765},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3402036428451538},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.24990606307983398},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24526116251945496},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.22161397337913513},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae096","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae096/56850937/btae096.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38374231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38374231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10914458","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10914458","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10914458/pdf/btae096.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.investigo.biblioteca.uvigo.es:11093/6578","is_oa":true,"landing_page_url":"http://hdl.handle.net/11093/6578","pdf_url":"https://www.investigo.biblioteca.uvigo.es/xmlui/bitstream/11093/6578/4/2024_ferreiro_protein_evolution.pdf","source":{"id":"https://openalex.org/S4377196408","display_name":"Investigo Institutional repository of UVigo (Universidade de Vigo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I6289922","host_organization_name":"Universidade de Vigo","host_organization_lineage":["https://openalex.org/I6289922"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae096","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae096/56850937/btae096.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1044294895","display_name":null,"funder_award_id":"ED481A","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3690828678","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5421974903","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5550858994","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6253677578","display_name":null,"funder_award_id":"ED481A-2020/192","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8684520763","display_name":null,"funder_award_id":"PID2019","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320324091","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595"},{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392533279.pdf","grobid_xml":"https://content.openalex.org/works/W4392533279.grobid-xml"},"referenced_works_count":115,"referenced_works":["https://openalex.org/W1492846538","https://openalex.org/W1512750650","https://openalex.org/W1881010148","https://openalex.org/W1965175390","https://openalex.org/W1973101413","https://openalex.org/W1981354484","https://openalex.org/W1984237696","https://openalex.org/W1986759708","https://openalex.org/W1990823383","https://openalex.org/W1991804333","https://openalex.org/W1993900316","https://openalex.org/W2003447278","https://openalex.org/W2010026647","https://openalex.org/W2011240878","https://openalex.org/W2013437827","https://openalex.org/W2014690416","https://openalex.org/W2016811301","https://openalex.org/W2017519756","https://openalex.org/W2026881360","https://openalex.org/W2031700956","https://openalex.org/W2032096575","https://openalex.org/W2032616735","https://openalex.org/W2038325177","https://openalex.org/W2041802555","https://openalex.org/W2041938888","https://openalex.org/W2044573154","https://openalex.org/W2046956642","https://openalex.org/W2053929098","https://openalex.org/W2062018285","https://openalex.org/W2063839249","https://openalex.org/W2085399911","https://openalex.org/W2090304431","https://openalex.org/W2096702350","https://openalex.org/W2103533532","https://openalex.org/W2104891575","https://openalex.org/W2107158607","https://openalex.org/W2116137622","https://openalex.org/W2116416291","https://openalex.org/W2116433671","https://openalex.org/W2117059491","https://openalex.org/W2118659960","https://openalex.org/W2122376908","https://openalex.org/W2124608480","https://openalex.org/W2126682991","https://openalex.org/W2129039174","https://openalex.org/W2129798238","https://openalex.org/W2132926880","https://openalex.org/W2133549457","https://openalex.org/W2139058004","https://openalex.org/W2139134537","https://openalex.org/W2139310526","https://openalex.org/W2142150428","https://openalex.org/W2142942973","https://openalex.org/W2143210482","https://openalex.org/W2144051643","https://openalex.org/W2147961425","https://openalex.org/W2152207030","https://openalex.org/W2152301430","https://openalex.org/W2155196220","https://openalex.org/W2156984627","https://openalex.org/W2157362913","https://openalex.org/W2159927403","https://openalex.org/W2162025818","https://openalex.org/W2162273481","https://openalex.org/W2162473374","https://openalex.org/W2163352757","https://openalex.org/W2163627198","https://openalex.org/W2165912261","https://openalex.org/W2165974744","https://openalex.org/W2167030304","https://openalex.org/W2169882791","https://openalex.org/W2178382936","https://openalex.org/W2186750819","https://openalex.org/W2266439690","https://openalex.org/W2301633793","https://openalex.org/W2471654536","https://openalex.org/W2568937766","https://openalex.org/W2600349519","https://openalex.org/W2614081736","https://openalex.org/W2625820528","https://openalex.org/W2766677998","https://openalex.org/W2779910604","https://openalex.org/W2800386769","https://openalex.org/W2897701522","https://openalex.org/W2941366761","https://openalex.org/W2949867654","https://openalex.org/W2951184823","https://openalex.org/W2953081915","https://openalex.org/W2968494487","https://openalex.org/W2969866109","https://openalex.org/W2994301183","https://openalex.org/W3006121039","https://openalex.org/W3023590112","https://openalex.org/W3081333755","https://openalex.org/W3095583226","https://openalex.org/W3100571307","https://openalex.org/W3109683635","https://openalex.org/W3125388979","https://openalex.org/W3177828909","https://openalex.org/W3184540805","https://openalex.org/W3186179742","https://openalex.org/W3194942089","https://openalex.org/W4210633230","https://openalex.org/W4213327714","https://openalex.org/W4225350207","https://openalex.org/W4230357098","https://openalex.org/W4251751280","https://openalex.org/W4283803957","https://openalex.org/W4307227931","https://openalex.org/W4310668499","https://openalex.org/W4310715387","https://openalex.org/W4323040519","https://openalex.org/W6678654634","https://openalex.org/W6679426382","https://openalex.org/W6731392063"],"related_works":["https://openalex.org/W2379444625","https://openalex.org/W2393147081","https://openalex.org/W2575869988","https://openalex.org/W4308647020","https://openalex.org/W2370088286","https://openalex.org/W2385568494","https://openalex.org/W2912058948","https://openalex.org/W2588424405","https://openalex.org/W2226294016","https://openalex.org/W4297145487"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,45,107,192],"selection":[2,79,136],"among":[3,80,85,137],"substitution":[4,27,42,69,171],"models":[5,28,31,47,123,141,162],"of":[6,124,156],"molecular":[7],"evolution":[8],"is":[9,177,194],"fundamental":[10],"for":[11,68],"obtaining":[12],"accurate":[13],"phylogenetic":[14],"inferences.":[15],"At":[16],"the":[17,93,103,150,167],"protein":[18,125,157],"level,":[19],"evolutionary":[20],"analyses":[21],"are":[22,36,65],"traditionally":[23],"based":[24,91],"on":[25,92],"empirical":[26,86,119,140,170],"but":[29,57],"these":[30],"make":[32],"unrealistic":[33],"assumptions":[34],"and":[35,87,99,112,116,120,139,186,199],"being":[37],"surpassed":[38],"by":[39],"structurally":[40],"constrained":[41],"(SCS)":[43],"models.":[44,172],"SCS":[46,82,89,122,138,161],"often":[48],"consider":[49],"site-dependent":[50,81,88,121],"evolution,":[51],"a":[52,75,154,188],"process":[53],"that":[54,64,133,160],"provides":[55,135],"realism":[56],"complicates":[58],"their":[59],"implementation":[60,101],"into":[61,102],"likelihood":[62],"functions":[63],"commonly":[66],"used":[67],"model":[70],"selection.":[71],"RESULTS:":[72],"We":[73],"present":[74],"method":[76],"to":[77,152],"perform":[78],"models,":[83,90],"also":[84],"approximate":[94],"Bayesian":[95],"computation":[96],"(ABC)":[97],"approach":[98],"its":[100],"computational":[104],"framework":[105,108,151,193],"ProteinModelerABC.":[106],"implements":[109],"ABC":[110],"with":[111,142,196],"without":[113],"regression":[114],"adjustments":[115],"includes":[117,187],"diverse":[118],"evolution.":[126],"Using":[127],"extensive":[128],"simulated":[129],"data,":[130],"we":[131,148],"found":[132],"it":[134],"acceptable":[143],"accuracy.":[144],"As":[145],"illustrative":[146],"examples,":[147],"applied":[149],"analyze":[153],"variety":[155],"families":[158],"observing":[159],"fit":[163],"them":[164],"better":[165],"than":[166],"corresponding":[168],"best-fitting":[169],"AVAILABILITY":[173],"AND":[174],"IMPLEMENTATION:":[175],"ProteinModelerABC":[176],"freely":[178],"available":[179],"from":[180],"https://github.com/DavidFerreiro/ProteinModelerABC,":[181],"can":[182],"run":[183],"in":[184],"parallel":[185],"graphical":[189],"user":[190],"interface.":[191],"distributed":[195],"detailed":[197],"documentation":[198],"ready-to-use":[200],"examples.":[201]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
