{"id":"https://openalex.org/W4392576406","doi":"https://doi.org/10.1093/bioinformatics/btae085","title":"preon: Fast and accurate entity normalization for drug names and cancer types in precision oncology","display_name":"preon: Fast and accurate entity normalization for drug names and cancer types in precision oncology","publication_year":2024,"publication_date":"2024-02-20","ids":{"openalex":"https://openalex.org/W4392576406","doi":"https://doi.org/10.1093/bioinformatics/btae085","pmid":"https://pubmed.ncbi.nlm.nih.gov/38383060"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae085/56886838/btae085.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae085/56886838/btae085.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063275428","display_name":"Arik Ermshaus","orcid":"https://orcid.org/0000-0002-8138-3060"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Arik Ermshaus","raw_affiliation_strings":["Institute for Computer Science, Humboldt-Universit\u00e4t zu Berlin , Berlin 10099, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Humboldt-Universit\u00e4t zu Berlin , Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035760095","display_name":"Michael Piechotta","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Piechotta","raw_affiliation_strings":["Institute for Computer Science, Humboldt-Universit\u00e4t zu Berlin , Berlin 10099, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Humboldt-Universit\u00e4t zu Berlin , Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027295442","display_name":"Gina R\u00fcter","orcid":null},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gina R\u00fcter","raw_affiliation_strings":["Charite Comprehensive Cancer Center, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charite Comprehensive Cancer Center, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066640097","display_name":"Ulrich Keilholz","orcid":"https://orcid.org/0000-0001-6773-9406"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulrich Keilholz","raw_affiliation_strings":["Charite Comprehensive Cancer Center, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charite Comprehensive Cancer Center, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["Institute for Computer Science, Humboldt-Universit\u00e4t zu Berlin , Berlin 10099, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Humboldt-Universit\u00e4t zu Berlin , Berlin 10099, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082059548","display_name":"Manuela Benary","orcid":"https://orcid.org/0000-0002-3067-2030"},"institutions":[{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Manuela Benary","raw_affiliation_strings":["Charite Comprehensive Cancer Center, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany","Core Unit Bioinformatics (CUBI), Berlin Institute of Health, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany"],"raw_orcid":"https://orcid.org/0000-0002-3067-2030","affiliations":[{"raw_affiliation_string":"Charite Comprehensive Cancer Center, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany","institution_ids":["https://openalex.org/I7877124"]},{"raw_affiliation_string":"Core Unit Bioinformatics (CUBI), Berlin Institute of Health, Charite\u2014Universit\u00e4tsmedizin Berlin , Berlin 10115, Germany","institution_ids":["https://openalex.org/I4210139777"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5063275428","https://openalex.org/A5082059548"],"corresponding_institution_ids":["https://openalex.org/I39343248","https://openalex.org/I4210139777","https://openalex.org/I7877124"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5005,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.64226478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"40","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8052999973297119,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.8052999973297119,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.029600000008940697,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.01360000018030405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7474948167800903},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.704875648021698},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6469066739082336},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6078411936759949},{"id":"https://openalex.org/keywords/harmonization","display_name":"Harmonization","score":0.5726543664932251},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5544848442077637},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5127754807472229},{"id":"https://openalex.org/keywords/precision-oncology","display_name":"Precision oncology","score":0.494735449552536},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4402988851070404},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4189624786376953},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.2723425030708313},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23944798111915588},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20855316519737244},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15730375051498413}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7474948167800903},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.704875648021698},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6469066739082336},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6078411936759949},{"id":"https://openalex.org/C2779962950","wikidata":"https://www.wikidata.org/wiki/Q5659376","display_name":"Harmonization","level":2,"score":0.5726543664932251},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5544848442077637},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5127754807472229},{"id":"https://openalex.org/C3020497934","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision oncology","level":3,"score":0.494735449552536},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4402988851070404},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4189624786376953},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.2723425030708313},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23944798111915588},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20855316519737244},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15730375051498413},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae085/56886838/btae085.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38383060","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38383060","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10918631","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10918631","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10918631/pdf/btae085.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae085","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/3/btae085/56886838/btae085.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4399999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320328691","display_name":"Gemeinsame Bundesausschuss","ror":"https://ror.org/008c2qm47"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392576406.pdf"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1550258693","https://openalex.org/W1987562803","https://openalex.org/W2169099542","https://openalex.org/W2558643140","https://openalex.org/W2569650726","https://openalex.org/W2787104581","https://openalex.org/W2899915536","https://openalex.org/W2900090807","https://openalex.org/W2901284966","https://openalex.org/W2948909602","https://openalex.org/W2952880826","https://openalex.org/W2962883142","https://openalex.org/W3014707956","https://openalex.org/W4212919921","https://openalex.org/W4285153328","https://openalex.org/W4311903220","https://openalex.org/W4388455891","https://openalex.org/W6748401859"],"related_works":["https://openalex.org/W2595172197","https://openalex.org/W2084856301","https://openalex.org/W2127970246","https://openalex.org/W2885125400","https://openalex.org/W1001352512","https://openalex.org/W1989889224","https://openalex.org/W4382618745","https://openalex.org/W1973775000","https://openalex.org/W2748922771","https://openalex.org/W2789551765"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1],"precision":[2],"oncology":[3],"(PO),":[4],"clinicians":[5],"aim":[6],"to":[7],"find":[8],"the":[9,24,46,74,95,119,125],"best":[10],"treatment":[11],"for":[12,32,56,69,84,94],"any":[13],"patient":[14],"based":[15],"on":[16],"their":[17],"molecular":[18],"characterization.":[19],"A":[20],"major":[21],"bottleneck":[22],"is":[23,88,111],"manual":[25],"annotation":[26],"and":[27,44,53,91,100,115,124],"evaluation":[28],"of":[29,37,49,62,76,97],"individual":[30],"variants,":[31],"which":[33],"usually":[34],"a":[35,89],"range":[36],"knowledge":[38],"bases":[39],"are":[40,64,130],"screened.":[41],"To":[42],"incorporate":[43],"integrate":[45],"vast":[47],"information":[48,63],"different":[50,60],"databases,":[51],"fast":[52,90],"accurate":[54,92],"methods":[55],"harmonizing":[57],"databases":[58],"with":[59],"types":[61,102],"necessary.":[65],"An":[66],"essential":[67],"step":[68],"harmonization":[70],"in":[71,103,113,132],"PO":[72],"includes":[73],"normalization":[75,96],"tumor":[77],"entities":[78],"as":[79,81],"well":[80],"therapy":[82],"options":[83],"patients.":[85],"SUMMARY:":[86],"preon":[87,110],"library":[93],"drug":[98],"names":[99],"cancer":[101],"large-scale":[104],"data":[105,126],"integration.":[106],"AVAILABILITY":[107],"AND":[108],"IMPLEMENTATION:":[109],"implemented":[112],"Python":[114],"freely":[116],"available":[117,131],"via":[118],"PyPI":[120],"repository.":[121],"Source":[122],"code":[123],"underlying":[127],"this":[128],"article":[129],"GitHub":[133],"at":[134],"https://github.com/ermshaua/preon/.":[135]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
