{"id":"https://openalex.org/W4391734518","doi":"https://doi.org/10.1093/bioinformatics/btae081","title":"NFTest: automated testing of Nextflow pipelines","display_name":"NFTest: automated testing of Nextflow pipelines","publication_year":2024,"publication_date":"2024-02-01","ids":{"openalex":"https://openalex.org/W4391734518","doi":"https://doi.org/10.1093/bioinformatics/btae081","pmid":"https://pubmed.ncbi.nlm.nih.gov/38341660"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae081","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae081/56659514/btae081.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae081/56659514/btae081.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046737885","display_name":"Yash Patel","orcid":"https://orcid.org/0000-0003-3113-7010"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yash Patel","raw_affiliation_strings":["Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","Department of Human Genetics, University of California, Los Angeles, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071035962","display_name":"Chenghao Zhu","orcid":"https://orcid.org/0000-0003-1674-4533"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chenghao Zhu","raw_affiliation_strings":["Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029886406","display_name":"Takafumi N. Yamaguchi","orcid":"https://orcid.org/0000-0003-1082-3871"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Takafumi N Yamaguchi","raw_affiliation_strings":["Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093908362","display_name":"Yuan Zhe Bugh","orcid":null},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuan Zhe Bugh","raw_affiliation_strings":["Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","Department of Human Genetics, University of California, Los Angeles, USA","Institute for Precision Health, University of California, Los Angeles, USA"],"affiliations":[{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110950000","display_name":"Mao Tian","orcid":null},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mao Tian","raw_affiliation_strings":["Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102967399","display_name":"Aaron Holmes","orcid":"https://orcid.org/0000-0002-1012-7879"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Holmes","raw_affiliation_strings":["Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","Department of Human Genetics, University of California, Los Angeles, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045863918","display_name":"Sorel Fitz\u2010Gibbon","orcid":"https://orcid.org/0000-0001-7090-5719"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sorel T Fitz-Gibbon","raw_affiliation_strings":["Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007657275","display_name":"Paul C. Boutros","orcid":"https://orcid.org/0000-0003-0553-7520"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210150380","display_name":"Broad Center","ror":"https://ror.org/04tbrah05","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210150380"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul C Boutros","raw_affiliation_strings":["Broad Stem Cell Research Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","Department of Urology, University of California, Los Angeles , Los Angeles, CA 90095, United States","Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States"],"affiliations":[{"raw_affiliation_string":"Broad Stem Cell Research Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I4210150380","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Urology, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute for Precision Health, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California, Los Angeles , Los Angeles, CA 90095, United States","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5007657275"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I4210150380"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":30.7115,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.99546307,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11367","display_name":"Particle accelerators and beam dynamics","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11367","display_name":"Particle accelerators and beam dynamics","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10346","display_name":"Magnetic confinement fusion research","score":0.9641000032424927,"subfield":{"id":"https://openalex.org/subfields/3106","display_name":"Nuclear and High Energy Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11220","display_name":"Water Systems and Optimization","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/2205","display_name":"Civil and Structural Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.6269232630729675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6044647693634033},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1709378957748413}],"concepts":[{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.6269232630729675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6044647693634033},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1709378957748413},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btae081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae081","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae081/56659514/btae081.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38341660","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38341660","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3dj5x0wt","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3dj5x0wt","pdf_url":"https://escholarship.org/content/qt3dj5x0wt/qt3dj5x0wt.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 40, iss 2","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10881102","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10881102","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10881102/pdf/btae081.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:ark:/13030/qt3dj5x0wt","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae081","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae081/56659514/btae081.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5400000214576721,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2176371381","display_name":null,"funder_award_id":"U54HG012517","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2246588367","display_name":null,"funder_award_id":"W81XWH2210247","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G2341660198","display_name":null,"funder_award_id":"P30CA016042","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G2611303216","display_name":null,"funder_award_id":"P30CA016042","funder_id":"https://openalex.org/F4320337550","funder_display_name":"Jonsson Comprehensive Cancer Center"},{"id":"https://openalex.org/G2995459769","display_name":null,"funder_award_id":"CA016042","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4119534169","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G5850682332","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6414496702","display_name":null,"funder_award_id":"U2CCA271894","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G705939876","display_name":null,"funder_award_id":"W81XWH2210751","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G7160166542","display_name":null,"funder_award_id":"U24CA248265","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7704933700","display_name":null,"funder_award_id":"P30CA016042","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8610265883","display_name":null,"funder_award_id":"R01CA270108","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8811886416","display_name":null,"funder_award_id":"R01CA244729","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337550","display_name":"Jonsson Comprehensive Cancer Center","ror":"https://ror.org/046rm7j60"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391734518.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W2032947860","https://openalex.org/W2050345155","https://openalex.org/W2108234281","https://openalex.org/W2110417468","https://openalex.org/W2119180969","https://openalex.org/W2120787570","https://openalex.org/W2149992227","https://openalex.org/W2151794156","https://openalex.org/W2159712408","https://openalex.org/W2161633633","https://openalex.org/W2513185582","https://openalex.org/W2602795292","https://openalex.org/W2605897695","https://openalex.org/W2867868648","https://openalex.org/W2951635356","https://openalex.org/W2999083352","https://openalex.org/W3003159103","https://openalex.org/W3131055609","https://openalex.org/W3160531185","https://openalex.org/W4214621353","https://openalex.org/W4226051960","https://openalex.org/W4239824389","https://openalex.org/W4252335603","https://openalex.org/W4391735175"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"NFTest":[0],"is":[1,11,20],"an":[2],"open-source":[3],"Python":[4],"framework":[5],"under":[6],"the":[7],"GPLv2":[8],"license":[9],"and":[10],"freely":[12],"available":[13,21],"at":[14],"https://github.com/uclahs-cds/tool-NFTest.":[15],"The":[16],"call-sSNV":[17],"Nextflow":[18],"pipeline":[19],"at:":[22],"https://github.com/uclahs-cds/pipeline-call-sSNV.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
