{"id":"https://openalex.org/W4391575908","doi":"https://doi.org/10.1093/bioinformatics/btae065","title":"DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning","display_name":"DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning","publication_year":2024,"publication_date":"2024-02-01","ids":{"openalex":"https://openalex.org/W4391575908","doi":"https://doi.org/10.1093/bioinformatics/btae065","pmid":"https://pubmed.ncbi.nlm.nih.gov/38317052"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae065","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae065/56588220/btae065.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae065/56588220/btae065.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064905063","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0002-9532-0917"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Bioinformatics Centre, Department of Biology, University of Copenhagen , K\u00f8benhavn \u00d8 2100, Denmark"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, Department of Biology, University of Copenhagen , K\u00f8benhavn \u00d8 2100, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003924863","display_name":"Marc Horlacher","orcid":"https://orcid.org/0000-0002-7884-7135"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc Horlacher","raw_affiliation_strings":["Computational Health Center, Helmholtz Center Munich , Neuherberg 85764, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Health Center, Helmholtz Center Munich , Neuherberg 85764, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021845548","display_name":"Lixin Cheng","orcid":"https://orcid.org/0000-0002-9427-383X"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lixin Cheng","raw_affiliation_strings":["Shenzhen People\u2019s Hospital, First Affiliated Hospital of Southern University of Science and Technology, Second Clinical Medicine College of Jinan University , Shenzhen 518020, China","Shenzhen People's Hospital, First Affiliated Hospital of Southern, University of Science and Technology, Second Clinical Medicine College of Jinan University, Shenzhen, 518020, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen People\u2019s Hospital, First Affiliated Hospital of Southern University of Science and Technology, Second Clinical Medicine College of Jinan University , Shenzhen 518020, China","institution_ids":["https://openalex.org/I3045169105","https://openalex.org/I159948400"]},{"raw_affiliation_string":"Shenzhen People's Hospital, First Affiliated Hospital of Southern, University of Science and Technology, Second Clinical Medicine College of Jinan University, Shenzhen, 518020, China","institution_ids":["https://openalex.org/I3045169105","https://openalex.org/I159948400"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082357240","display_name":"Ole Winther","orcid":"https://orcid.org/0000-0002-1966-3205"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2802567020","display_name":"Copenhagen University Hospital","ror":"https://ror.org/05bpbnx46","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802567020"]},{"id":"https://openalex.org/I2802709434","display_name":"Rigshospitalet","ror":"https://ror.org/03mchdq19","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802567020","https://openalex.org/I2802709434","https://openalex.org/I4210145385"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Ole Winther","raw_affiliation_strings":["Bioinformatics Centre, Department of Biology, University of Copenhagen , K\u00f8benhavn \u00d8 2100, Denmark","Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital) , Copenhagen 2100, Denmark","Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark , Kongens Lyngby 2800, Denmark","Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby, 2800, Denmark","Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital), Copenhagen, 2100, Denmark"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, Department of Biology, University of Copenhagen , K\u00f8benhavn \u00d8 2100, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital) , Copenhagen 2100, Denmark","institution_ids":["https://openalex.org/I2802567020","https://openalex.org/I2802709434"]},{"raw_affiliation_string":"Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark , Kongens Lyngby 2800, Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby, 2800, Denmark","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital), Copenhagen, 2100, Denmark","institution_ids":["https://openalex.org/I2802567020","https://openalex.org/I2802709434"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064905063"],"corresponding_institution_ids":["https://openalex.org/I124055696"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.6554,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.93496191,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.740003764629364},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7150728106498718},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6850050687789917},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6024771332740784},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6011166572570801},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.5902824997901917},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4675183594226837},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4102093577384949},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20786091685295105},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15865632891654968},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.11458107829093933},{"id":"https://openalex.org/keywords/cytoplasm","display_name":"Cytoplasm","score":0.0822782814502716}],"concepts":[{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.740003764629364},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7150728106498718},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6850050687789917},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6024771332740784},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6011166572570801},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.5902824997901917},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4675183594226837},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4102093577384949},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20786091685295105},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15865632891654968},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.11458107829093933},{"id":"https://openalex.org/C190062978","wikidata":"https://www.wikidata.org/wiki/Q79899","display_name":"Cytoplasm","level":2,"score":0.0822782814502716},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btae065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae065","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae065/56588220/btae065.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38317052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38317052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10879750","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10879750","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10879750/pdf/btae065.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4345e18c-ab45-4edf-a6f7-1fb5f94291dd","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/4345e18c-ab45-4edf-a6f7-1fb5f94291dd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang , J , Horlacher , M , Cheng , L & Winther , O 2024 , ' DeepLocRNA : an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning ' , Bioinformatics , vol. 40 , no. 2 , btae065 . https://doi.org/10.1093/bioinformatics/btae065","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/2e01c17f-8ab0-4426-be71-7003f4caa25a","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/2e01c17f-8ab0-4426-be71-7003f4caa25a","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang , J , Horlacher , M , Cheng , L & Winther , O 2024 , ' DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localisation with domain-specific transfer-learning ' , Bioinformatics , vol. 40 , no. 2 , btae065 . https://doi.org/10.1093/bioinformatics/btae065","raw_type":"article"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:69880","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=69880","pdf_url":null,"source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 40:btae065 (2024)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae065","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae065","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae065/56588220/btae065.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1154953777","display_name":null,"funder_award_id":"0062606","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"},{"id":"https://openalex.org/G1426318481","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G2300736770","display_name":null,"funder_award_id":"(CSC)","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G3034753964","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G8363685846","display_name":null,"funder_award_id":"NNF20OC0062606","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G8589651859","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320943","display_name":"Danmarks Grundforskningsfond","ror":"https://ror.org/00znyv691"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391575908.pdf"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W776567260","https://openalex.org/W1019830208","https://openalex.org/W1970302143","https://openalex.org/W1984574291","https://openalex.org/W2008092626","https://openalex.org/W2012918968","https://openalex.org/W2030180346","https://openalex.org/W2045095006","https://openalex.org/W2054091111","https://openalex.org/W2058970225","https://openalex.org/W2063798177","https://openalex.org/W2073424121","https://openalex.org/W2080496806","https://openalex.org/W2090661905","https://openalex.org/W2099879643","https://openalex.org/W2114532236","https://openalex.org/W2119601615","https://openalex.org/W2134625814","https://openalex.org/W2140912731","https://openalex.org/W2141394827","https://openalex.org/W2167093496","https://openalex.org/W2170747616","https://openalex.org/W2222339343","https://openalex.org/W2307041907","https://openalex.org/W2311921258","https://openalex.org/W2555707037","https://openalex.org/W2762810610","https://openalex.org/W2789926271","https://openalex.org/W2790694021","https://openalex.org/W2800688743","https://openalex.org/W2808950870","https://openalex.org/W2891861470","https://openalex.org/W2895733302","https://openalex.org/W2950243753","https://openalex.org/W2962655813","https://openalex.org/W2980163489","https://openalex.org/W3004263072","https://openalex.org/W3015693380","https://openalex.org/W3026307143","https://openalex.org/W3046003662","https://openalex.org/W3087823759","https://openalex.org/W3122576841","https://openalex.org/W3124828689","https://openalex.org/W3134329288","https://openalex.org/W3152172570","https://openalex.org/W3198604700","https://openalex.org/W3199924206","https://openalex.org/W4250536395","https://openalex.org/W4294992958","https://openalex.org/W4384663343","https://openalex.org/W4385579175"],"related_works":["https://openalex.org/W4206357785","https://openalex.org/W4281381188","https://openalex.org/W2951211570","https://openalex.org/W3192840557","https://openalex.org/W4375928479","https://openalex.org/W3167935049","https://openalex.org/W3023427754","https://openalex.org/W3131673289","https://openalex.org/W4393011546","https://openalex.org/W4380075502"],"abstract_inverted_index":{"In":[0],"this":[1],"article,":[2],"we":[3],"propose":[4],"DeepLocRNA,":[5],"an":[6],"interpretable":[7],"deep-learning":[8],"model":[9,17,47,98],"that":[10,91],"leverages":[11],"a":[12,32,76],"pre-trained":[13],"multi-task":[14],"RBP-binding":[15],"prediction":[16,103],"to":[18,81,93,123],"predict":[19],"the":[20,43,83,86,94,115,130],"subcellular":[21,54],"localization":[22,55,116],"of":[23,85,118,126],"RNA":[24,37,53,107,119],"molecules":[25,120],"via":[26],"fine-tuning.":[27],"We":[28],"constructed":[29],"DeepLocRNA":[30],"using":[31],"comprehensive":[33],"dataset":[34],"with":[35],"variant":[36],"types":[38,108],"and":[39,58,72,101,109,121],"evaluated":[40],"it":[41],"on":[42,69],"held-out":[44],"dataset.":[45],"Our":[46],"achieved":[48],"state-of-the-art":[49],"performance":[50],"in":[51,56],"predicting":[52],"mRNA":[57],"miRNA.":[59],"It":[60],"has":[61],"also":[62],"demonstrated":[63],"great":[64],"generalization":[65],"capabilities,":[66],"performing":[67],"well":[68],"both":[70],"human":[71],"mouse":[73],"RNA.":[74],"Additionally,":[75],"motif":[77],"analysis":[78],"was":[79],"performed":[80],"enhance":[82],"interpretability":[84],"model,":[87],"highlighting":[88],"signal":[89],"factors":[90],"contributed":[92],"predictions.":[95],"The":[96],"proposed":[97],"provides":[99],"general":[100],"powerful":[102],"abilities":[104],"for":[105],"different":[106],"species,":[110],"offering":[111],"valuable":[112],"insights":[113],"into":[114],"patterns":[117],"contributing":[122],"our":[124],"understanding":[125],"cellular":[127],"processes":[128],"at":[129],"molecular":[131],"level.":[132],"A":[133],"user-friendly":[134],"web":[135],"server":[136],"is":[137],"available":[138],"at:":[139],"https://biolib.com/KU/DeepLocRNA/.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}