{"id":"https://openalex.org/W4391709091","doi":"https://doi.org/10.1093/bioinformatics/btae054","title":"SpecieScan: semi-automated taxonomic identification of bone collagen peptides from MALDI-ToF-MS","display_name":"SpecieScan: semi-automated taxonomic identification of bone collagen peptides from MALDI-ToF-MS","publication_year":2024,"publication_date":"2024-02-09","ids":{"openalex":"https://openalex.org/W4391709091","doi":"https://doi.org/10.1093/bioinformatics/btae054","pmid":"https://pubmed.ncbi.nlm.nih.gov/38337062"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae054","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae054","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031716455","display_name":"Emese I. V\u00e9gh","orcid":"https://orcid.org/0000-0002-5871-2815"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["AT","BE"],"is_corresponding":false,"raw_author_name":"Emese I V\u00e9gh","raw_affiliation_strings":["Archaeology, Environmental Changes, and Geochemistry, Vrije Universiteit Brussel , 1050 Brussels, Belgium","Department of Evolutionary Anthropology, University of Vienna, University Biology Building , A-1030 Vienna, Austria","Human Evolution and Archaeological Sciences (HEAS), University of Vienna , Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0002-5871-2815","affiliations":[{"raw_affiliation_string":"Archaeology, Environmental Changes, and Geochemistry, Vrije Universiteit Brussel , 1050 Brussels, Belgium","institution_ids":["https://openalex.org/I13469542"]},{"raw_affiliation_string":"Department of Evolutionary Anthropology, University of Vienna, University Biology Building , A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Human Evolution and Archaeological Sciences (HEAS), University of Vienna , Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009770538","display_name":"Katerina Douka","orcid":"https://orcid.org/0000-0002-0558-0011"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Katerina Douka","raw_affiliation_strings":["Department of Evolutionary Anthropology, University of Vienna, University Biology Building , A-1030 Vienna, Austria","Human Evolution and Archaeological Sciences (HEAS), University of Vienna , Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0002-0558-0011","affiliations":[{"raw_affiliation_string":"Department of Evolutionary Anthropology, University of Vienna, University Biology Building , A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Human Evolution and Archaeological Sciences (HEAS), University of Vienna , Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":14.7751,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.98754971,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"40","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10087","display_name":"Archaeology and ancient environmental studies","score":0.2393999993801117,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10087","display_name":"Archaeology and ancient environmental studies","score":0.2393999993801117,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11212","display_name":"Cultural Heritage Materials Analysis","score":0.17329999804496765,"subfield":{"id":"https://openalex.org/subfields/1204","display_name":"Archeology"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10421","display_name":"Pleistocene-Era Hominins and Archaeology","score":0.1670999974012375,"subfield":{"id":"https://openalex.org/subfields/3314","display_name":"Anthropology"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7930258512496948},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6668133735656738},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5412172675132751},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5265564918518066},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.46474191546440125},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4385097324848175},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3770858347415924},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3750825822353363},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35561251640319824},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3489837050437927},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.29389387369155884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23531612753868103},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.23511457443237305},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11969161033630371}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7930258512496948},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6668133735656738},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5412172675132751},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5265564918518066},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.46474191546440125},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4385097324848175},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3770858347415924},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3750825822353363},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35561251640319824},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3489837050437927},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29389387369155884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23531612753868103},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.23511457443237305},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11969161033630371},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae054","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38337062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38337062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10918634","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10918634","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10918634/pdf/btae054.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:173561","is_oa":true,"landing_page_url":"https://biblio.vub.ac.be/vubir/speciescan-semiautomated-taxonomic-identification-of-bone-collagen-peptides-from-malditof-ms(9bf4ce04-1ace-402c-8ad5-8dd1d779db1b).html","pdf_url":"https://biblio.vub.ac.be/vubirfiles/140759026/btae054.pdf","source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae054","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.41999998688697815,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2417456502","display_name":null,"funder_award_id":"715069","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321691","display_name":"Universit\u00e4t Wien","ror":"https://ror.org/03prydq77"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320321770","display_name":"Siberian Branch, Russian Academy of Sciences","ror":"https://ror.org/02frkq021"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null},{"id":"https://openalex.org/F4320334801","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1763833965","https://openalex.org/W1968515758","https://openalex.org/W1971025624","https://openalex.org/W1974794668","https://openalex.org/W1986844839","https://openalex.org/W2002040375","https://openalex.org/W2003265267","https://openalex.org/W2064864372","https://openalex.org/W2073341844","https://openalex.org/W2134571812","https://openalex.org/W2147214095","https://openalex.org/W2203788835","https://openalex.org/W2298163369","https://openalex.org/W2318669644","https://openalex.org/W2327371676","https://openalex.org/W2520134833","https://openalex.org/W2525327834","https://openalex.org/W2766499887","https://openalex.org/W2794613307","https://openalex.org/W2806785209","https://openalex.org/W2888251365","https://openalex.org/W2915652153","https://openalex.org/W2944625166","https://openalex.org/W3009978361","https://openalex.org/W3012249978","https://openalex.org/W3092674644","https://openalex.org/W3103963748","https://openalex.org/W3119601144","https://openalex.org/W3128840143","https://openalex.org/W3161003553","https://openalex.org/W3167322793","https://openalex.org/W3192424348","https://openalex.org/W3193141566","https://openalex.org/W3210610145","https://openalex.org/W3215607168","https://openalex.org/W4229456666","https://openalex.org/W4307780890","https://openalex.org/W4367396099","https://openalex.org/W6687742424","https://openalex.org/W6730007767","https://openalex.org/W6785920819"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W4287027380","https://openalex.org/W3193760048","https://openalex.org/W4285822516","https://openalex.org/W2505261959"],"abstract_inverted_index":{"MOTIVATION:":[0],"Zooarchaeology":[1],"by":[2],"Mass":[3],"Spectrometry":[4],"(ZooMS)":[5],"is":[6,40],"a":[7,34],"palaeoproteomics":[8],"method":[9],"for":[10,49,135],"the":[11,29,87,95,127,133,150],"taxonomic":[12,79],"determination":[13],"of":[14],"collagen,":[15],"which":[16],"traditionally":[17],"involves":[18],"challenging":[19],"manual":[20],"spectra":[21],"analysis":[22],"with":[23,86,149],"limitations":[24],"in":[25,94,112,154],"quantitative":[26],"results.":[27],"As":[28],"ZooMS":[30],"reference":[31,88,157],"database":[32],"expands,":[33],"faster":[35],"and":[36,67,90,129,159],"reproducible":[37],"identification":[38,52],"tool":[39],"necessary.":[41],"Here":[42],"we":[43,122],"present":[44,93],"SpecieScan,":[45],"an":[46],"open-access":[47],"algorithm":[48],"automating":[50],"taxa":[51],"from":[53,102],"raw":[54,151],"MALDI-ToF":[55],"mass":[56],"spectrometry":[57],"(MS)":[58],"data.":[59],"RESULTS:":[60],"SpecieScan":[61,146],"was":[62],"developed":[63],"using":[64,117],"R":[65],"(pre-processing)":[66],"Python":[68],"(automation).":[69],"The":[70,145],"algorithm's":[71],"output":[72],"includes":[73],"identified":[74],"peptide":[75],"markers,":[76],"closest":[77],"matching":[78],"group":[80],"(taxon,":[81],"family,":[82],"order),":[83],"correlation":[84],"scores":[85],"databases,":[89],"contaminant":[91],"peaks":[92],"spectra.":[96],"Testing":[97],"on":[98,166],"original":[99],"MS":[100],"data":[101,152],"bones":[103],"discovered":[104],"at":[105,126,132],"Palaeothic":[106],"archaeological":[107],"sites,":[108],"including":[109],"Denisova":[110],"Cave":[111],"Russia,":[113],"as":[114,116],"well":[115],"publicly-available,":[118],"externally":[119],"produced":[120],"data,":[121],"achieved":[123],">90%":[124],"accuracy":[125,131],"genus-level":[128],"\u223c92%":[130],"family-level":[134],"mammalian":[136],"bone":[137],"collagen":[138],"previously":[139],"analysed":[140],"manually.":[141],"AVAILABILITY":[142],"AND":[143],"IMPLEMENTATION:":[144],"algorithm,":[147],"along":[148],"used":[153],"testing,":[155],"results,":[156],"database,":[158],"common":[160],"contaminants":[161],"lists":[162],"are":[163],"freely":[164],"available":[165],"Github":[167],"(https://github.com/mesve/SpecieScan).":[168]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2024-02-10T00:00:00"}
