{"id":"https://openalex.org/W4391168940","doi":"https://doi.org/10.1093/bioinformatics/btae041","title":"3D Optical Coherence Tomography image processing in BISCAP: characterization of biofilm structure and properties","display_name":"3D Optical Coherence Tomography image processing in BISCAP: characterization of biofilm structure and properties","publication_year":2024,"publication_date":"2024-01-23","ids":{"openalex":"https://openalex.org/W4391168940","doi":"https://doi.org/10.1093/bioinformatics/btae041","pmid":"https://pubmed.ncbi.nlm.nih.gov/38265243"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae041","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae041/56370384/btae041.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae041/56370384/btae041.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073829074","display_name":"Diogo A. C. Narciso","orcid":"https://orcid.org/0000-0002-2776-7477"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210150309","display_name":"Research Center for Natural Resources, Environment and Society","ror":"https://ror.org/03n7krn06","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210150309"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Diogo A C Narciso","raw_affiliation_strings":["CERENA\u2014Centro Recursos Naturais e Ambiente, Department of Chemical Engineering, Instituto Superior T\u00e9cnico, University of Lisbon , 1049-001 Lisbon, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-2776-7477","affiliations":[{"raw_affiliation_string":"CERENA\u2014Centro Recursos Naturais e Ambiente, Department of Chemical Engineering, Instituto Superior T\u00e9cnico, University of Lisbon , 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210150309","https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039779581","display_name":"Ana Pereira","orcid":"https://orcid.org/0000-0002-8856-8703"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ana Pereira","raw_affiliation_strings":["ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101482615","display_name":"Nuno O Dias","orcid":"https://orcid.org/0000-0002-7129-1170"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Nuno O Dias","raw_affiliation_strings":["ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-7129-1170","affiliations":[{"raw_affiliation_string":"ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101944454","display_name":"Manuel Monteiro","orcid":"https://orcid.org/0009-0002-3988-4096"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Manuel Monteiro","raw_affiliation_strings":["ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal"],"raw_orcid":"https://orcid.org/0009-0002-3988-4096","affiliations":[{"raw_affiliation_string":"ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013687962","display_name":"L. F. Melo","orcid":"https://orcid.org/0000-0002-8469-4462"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Luis F Melo","raw_affiliation_strings":["ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028929333","display_name":"F.G. Martins","orcid":"https://orcid.org/0000-0003-0960-4620"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Fernando G Martins","raw_affiliation_strings":["ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ALiCE\u2014Associate Laboratory in Chemical Engineering, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"LEPABE\u2014Laboratory for Process Engineering, Environment, Biotechnology and Energy, Chemical Engineering Department, Faculty of Engineering, University of Porto , Porto 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5073829074"],"corresponding_institution_ids":["https://openalex.org/I141596103","https://openalex.org/I4210150309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9539,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.70350809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"40","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11569","display_name":"Optical Coherence Tomography Applications","score":0.8988000154495239,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11569","display_name":"Optical Coherence Tomography Applications","score":0.8988000154495239,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.029600000008940697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11826","display_name":"Ocular Infections and Treatments","score":0.006800000090152025,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.8047250509262085},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7463842034339905},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.672680139541626},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.5718796253204346},{"id":"https://openalex.org/keywords/optical-coherence-tomography","display_name":"Optical coherence tomography","score":0.5326492190361023},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5133540034294128},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4978175163269043},{"id":"https://openalex.org/keywords/coherence","display_name":"Coherence (philosophical gambling strategy)","score":0.45799025893211365},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4248467683792114},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.37697741389274597},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3300800919532776},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.13579046726226807},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11809015274047852},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08197912573814392}],"concepts":[{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.8047250509262085},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7463842034339905},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.672680139541626},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.5718796253204346},{"id":"https://openalex.org/C2778818243","wikidata":"https://www.wikidata.org/wiki/Q899552","display_name":"Optical coherence tomography","level":2,"score":0.5326492190361023},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5133540034294128},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4978175163269043},{"id":"https://openalex.org/C2781181686","wikidata":"https://www.wikidata.org/wiki/Q4226068","display_name":"Coherence (philosophical gambling strategy)","level":2,"score":0.45799025893211365},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4248467683792114},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.37697741389274597},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3300800919532776},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.13579046726226807},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11809015274047852},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08197912573814392},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D041623","descriptor_name":"Tomography, Optical Coherence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btae041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae041","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae041/56370384/btae041.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38265243","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38265243","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10868339","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10868339","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10868339/pdf/btae041.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:osti.gov:2301695","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2301695","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:repositorio-aberto.up.pt:10216/166803","is_oa":false,"landing_page_url":"https://hdl.handle.net/10216/166803","pdf_url":null,"source":{"id":"https://openalex.org/S4306401934","display_name":"Open Repository of the University of Porto (University of Porto)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I182534213","host_organization_name":"Universidade do Porto","host_organization_lineage":["https://openalex.org/I182534213"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Artigo em Revista Cient\u00edfica Internacional"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae041","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae041/56370384/btae041.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1279857300","display_name":null,"funder_award_id":"10.54499/LA/P/0045/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2680426100","display_name":"ALICE - Associate Laboratory in Chemical Engineering","funder_award_id":"LA/P/0045/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4737455006","display_name":"Laboratory for Process Engineering, Environment, Biotechnology and Energy","funder_award_id":"UIDB/00511/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5538107981","display_name":null,"funder_award_id":"UIDP/00511/2020","funder_id":"https://openalex.org/F4320323642","funder_display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior"},{"id":"https://openalex.org/G5606619412","display_name":"Laboratory for Process Engineering, Environment, Biotechnology and Energy","funder_award_id":"UIDP/00511/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6701175450","display_name":null,"funder_award_id":"LA/P/0045/2020","funder_id":"https://openalex.org/F4320323642","funder_display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior"},{"id":"https://openalex.org/G6966053713","display_name":null,"funder_award_id":"UIDB/00511/2020","funder_id":"https://openalex.org/F4320323642","funder_display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior"}],"funders":[{"id":"https://openalex.org/F4320323642","display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior","ror":"https://ror.org/045b9pr88"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320337197","display_name":"Nuclear Fuel Cycle and Supply Chain","ror":"https://ror.org/05tj7dm33"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391168940.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1991481723","https://openalex.org/W1994104338","https://openalex.org/W1995795568","https://openalex.org/W2011301426","https://openalex.org/W2020565165","https://openalex.org/W2043113777","https://openalex.org/W2087013744","https://openalex.org/W2133059825","https://openalex.org/W2162335168","https://openalex.org/W2242464395","https://openalex.org/W2480010979","https://openalex.org/W2557171271","https://openalex.org/W2592996814","https://openalex.org/W2954471814","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3193474757","https://openalex.org/W4205666504","https://openalex.org/W4226530667","https://openalex.org/W4281560571","https://openalex.org/W4306947801","https://openalex.org/W4323051464","https://openalex.org/W6803376173"],"related_works":["https://openalex.org/W3153292769","https://openalex.org/W2045444909","https://openalex.org/W1516398359","https://openalex.org/W1901656956","https://openalex.org/W2990805456","https://openalex.org/W2941659365","https://openalex.org/W4239210160","https://openalex.org/W2376300433","https://openalex.org/W4242605858","https://openalex.org/W2495255596"],"abstract_inverted_index":{"MOTIVATION:":[0],"BISCAP":[1,84,134,171],"is":[2,22,37,163,172],"a":[3,38,79,153],"state-of-the-art":[4],"tool":[5],"for":[6,68,165],"automatically":[7],"characterizing":[8],"biofilm":[9],"images":[10,32,36,139,177],"obtained":[11],"from":[12,174,188],"Optical":[13],"Coherence":[14],"Tomography.":[15],"Limited":[16],"availability":[17],"of":[18,40,51,54,83,93,116,132,140,149],"other":[19],"software":[20],"tools":[21],"reported":[23],"in":[24,102,152,179],"the":[25,48,61,75,91,94,99,129,180,183],"field.":[26],"BISCAP's":[27],"first":[28],"version":[29],"processes":[30],"2D":[31,56,69],"only.":[33],"Processing":[34],"3D":[35,76,103,130,138,150],"problem":[39],"greater":[41],"scientific":[42],"relevance":[43],"since":[44],"it":[45],"deals":[46],"with":[47,142],"entire":[49],"structure":[50,131],"biofilms":[52,141],"instead":[53],"their":[55],"slices.":[57],"RESULTS:":[58],"Building":[59],"on":[60],"image-processing":[62],"principles":[63],"and":[64,78,119,182],"algorithms":[65],"proposed":[66],"earlier":[67],"images,":[70],"these":[71],"were":[72,107],"adapted":[73],"to":[74,97,110,124],"case,":[77],"more":[80],"general":[81],"implementation":[82],"was":[85,122,135],"developed.":[86],"The":[87,114],"primary":[88],"goal":[89],"concerns":[90],"extension":[92],"initial":[95],"methodology":[96],"incorporate":[98],"depth":[100],"axis":[101],"images;":[104],"multiple":[105],"improvements":[106],"also":[108],"made":[109],"boost":[111],"computational":[112],"performance.":[113],"calculation":[115],"structural":[117],"properties":[118],"visual":[120],"outputs":[121],"extended":[123],"offer":[125],"new":[126],"insights":[127],"into":[128],"biofilms.":[133],"tested":[136],"using":[137,156],"different":[143],"morphologies,":[144],"consistently":[145],"delivering":[146],"accurate":[147],"characterizations":[148],"structures":[151],"few":[154],"minutes":[155],"standard":[157],"laptop":[158],"machines.":[159],"Low":[160],"user":[161],"dependency":[162],"required":[164],"image":[166],"analysis.":[167],"AVAILABILITY":[168],"AND":[169],"IMPLEMENTATION:":[170],"available":[173,187],"https://github.com/diogonarciso/BISCAP.":[175],"All":[176],"used":[178],"tutorials":[181],"validation":[184],"examples":[185],"are":[186],"https://web.fe.up.pt/\u223cfgm/biscap3d.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
