{"id":"https://openalex.org/W4389767336","doi":"https://doi.org/10.1093/bioinformatics/btad756","title":"Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment","display_name":"Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4389767336","doi":"https://doi.org/10.1093/bioinformatics/btad756","pmid":"https://pubmed.ncbi.nlm.nih.gov/38096571"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad756","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad756","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/12/btad756/54770622/btad756.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/12/btad756/54770622/btad756.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086161793","display_name":"Marcos D\u00edaz\u2010Gay","orcid":"https://orcid.org/0000-0003-0658-0467"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marcos D\u00edaz-Gay","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082559067","display_name":"Raviteja Vangara","orcid":"https://orcid.org/0000-0001-5272-6207"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raviteja Vangara","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103030066","display_name":"Mark Barnes","orcid":"https://orcid.org/0000-0002-5650-780X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Barnes","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120798284","display_name":"Xi Wang","orcid":"https://orcid.org/0009-0005-7803-6075"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xi Wang","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045381779","display_name":"S. M. Ashiqul Islam","orcid":"https://orcid.org/0000-0002-5686-6474"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S M Ashiqul Islam","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020084627","display_name":"Ian Vermes","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian Vermes","raw_affiliation_strings":["COSMIC, Wellcome Sanger Institute , Hinxton, Cambridgeshire CB10 1SA, United Kingdom"],"affiliations":[{"raw_affiliation_string":"COSMIC, Wellcome Sanger Institute , Hinxton, Cambridgeshire CB10 1SA, United Kingdom","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019730722","display_name":"Stephen O. Duke","orcid":"https://orcid.org/0000-0001-7210-5168"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen Duke","raw_affiliation_strings":["COSMIC, Wellcome Sanger Institute , Hinxton, Cambridgeshire CB10 1SA, United Kingdom"],"affiliations":[{"raw_affiliation_string":"COSMIC, Wellcome Sanger Institute , Hinxton, Cambridgeshire CB10 1SA, United Kingdom","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092453610","display_name":"Nithish Bharadhwaj Narasimman","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nithish Bharadhwaj Narasimman","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049616921","display_name":"Ting Yang","orcid":"https://orcid.org/0000-0001-7201-4231"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ting Yang","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068439832","display_name":"Zichen Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zichen Jiang","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101753757","display_name":"Sarah Moody","orcid":"https://orcid.org/0000-0003-4904-1041"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah Moody","raw_affiliation_strings":["Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus , Cambridge CB10 1SA, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus , Cambridge CB10 1SA, United Kingdom","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012998275","display_name":"S. Senkin","orcid":"https://orcid.org/0000-0001-5848-005X"},"institutions":[{"id":"https://openalex.org/I42237331","display_name":"Centre international de recherche sur le cancer","ror":"https://ror.org/00v452281","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210105654","https://openalex.org/I42237331"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sergey Senkin","raw_affiliation_strings":["Genetic Epidemiology Group, International Agency for Research on Cancer , 69372 Lyon, France"],"affiliations":[{"raw_affiliation_string":"Genetic Epidemiology Group, International Agency for Research on Cancer , 69372 Lyon, France","institution_ids":["https://openalex.org/I42237331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001258652","display_name":"Paul Brennan","orcid":"https://orcid.org/0000-0002-0518-8714"},"institutions":[{"id":"https://openalex.org/I42237331","display_name":"Centre international de recherche sur le cancer","ror":"https://ror.org/00v452281","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210105654","https://openalex.org/I42237331"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Paul Brennan","raw_affiliation_strings":["Genetic Epidemiology Group, International Agency for Research on Cancer , 69372 Lyon, France"],"affiliations":[{"raw_affiliation_string":"Genetic Epidemiology Group, International Agency for Research on Cancer , 69372 Lyon, France","institution_ids":["https://openalex.org/I42237331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058103562","display_name":"Michael R. Stratton","orcid":"https://orcid.org/0000-0001-6035-153X"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael R Stratton","raw_affiliation_strings":["Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus , Cambridge CB10 1SA, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute, Wellcome Genome Campus , Cambridge CB10 1SA, United Kingdom","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080997789","display_name":"Ludmil B. Alexandrov","orcid":"https://orcid.org/0000-0003-3596-4515"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ludmil B Alexandrov","raw_affiliation_strings":["Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, UC San Diego , La Jolla, CA 92093, United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, UC San Diego , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5086161793"],"corresponding_institution_ids":["https://openalex.org/I36258959","https://openalex.org/I4210133661"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":35.5693,"has_fulltext":true,"cited_by_count":151,"citation_normalized_percentile":{"value":0.99821659,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"39","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.7804416418075562},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6412231922149658},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5299925208091736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4865640699863434},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4862886369228363},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20009750127792358}],"concepts":[{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.7804416418075562},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6412231922149658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5299925208091736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4865640699863434},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4862886369228363},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20009750127792358}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad756","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad756","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/12/btad756/54770622/btad756.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38096571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38096571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10746860","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10746860","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10746860/pdf/btad756.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad756","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad756","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/12/btad756/54770622/btad756.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7483984754","display_name":null,"funder_award_id":"C98/A24032","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"}],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389767336.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W2008255210","https://openalex.org/W2059300459","https://openalex.org/W2204695746","https://openalex.org/W2276335691","https://openalex.org/W2333836441","https://openalex.org/W2787894218","https://openalex.org/W2800002600","https://openalex.org/W2804397342","https://openalex.org/W2808484886","https://openalex.org/W2898789672","https://openalex.org/W2970967145","https://openalex.org/W2981552021","https://openalex.org/W3003949123","https://openalex.org/W3004480399","https://openalex.org/W3006132030","https://openalex.org/W3043045157","https://openalex.org/W3044545672","https://openalex.org/W3089590915","https://openalex.org/W4224263489","https://openalex.org/W4225587613","https://openalex.org/W4282965548","https://openalex.org/W4282980285","https://openalex.org/W4296819410"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2016712296","https://openalex.org/W2146849562","https://openalex.org/W2028961943"],"abstract_inverted_index":{"SigProfilerAssignment":[0],"is":[1],"available":[2],"under":[3],"the":[4],"BSD":[5],"2-clause":[6],"license":[7],"at":[8,14],"https://github.com/AlexandrovLab/SigProfilerAssignment":[9],"with":[10],"a":[11],"web":[12],"implementation":[13],"https://cancer.sanger.ac.uk/signatures/assignment/.":[15]},"counts_by_year":[{"year":2026,"cited_by_count":31},{"year":2025,"cited_by_count":79},{"year":2024,"cited_by_count":38},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
