{"id":"https://openalex.org/W4390793818","doi":"https://doi.org/10.1093/bioinformatics/btad738","title":"Seq-InSite: sequence supersedes structure for protein interaction site prediction","display_name":"Seq-InSite: sequence supersedes structure for protein interaction site prediction","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4390793818","doi":"https://doi.org/10.1093/bioinformatics/btad738","pmid":"https://pubmed.ncbi.nlm.nih.gov/38212995"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad738","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad738/55520224/btad738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad738/55520224/btad738.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087393927","display_name":"SeyedMohsen Hosseini","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"SeyedMohsen Hosseini","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario , London, ON N6A 5B7, Canada","Department of Computer Science, University of Western Ontario, London, Ontario N6A 5B7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario , London, ON N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047864197","display_name":"G. Brian Golding","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"G Brian Golding","raw_affiliation_strings":["Department of Biology, McMaster University , Hamilton, ON L8S 4K1, Canada","Department of Biology, McMaster University, Hamilton, Ontario L8S 4K1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biology, McMaster University , Hamilton, ON L8S 4K1, Canada","institution_ids":["https://openalex.org/I98251732"]},{"raw_affiliation_string":"Department of Biology, McMaster University, Hamilton, Ontario L8S 4K1, Canada","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048178906","display_name":"Lucian Ilie","orcid":"https://orcid.org/0000-0003-1856-3509"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lucian Ilie","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario , London, ON N6A 5B7, Canada","Department of Computer Science, University of Western Ontario, London, Ontario N6A 5B7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario , London, ON N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Ontario N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5087393927"],"corresponding_institution_ids":["https://openalex.org/I125749732"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.9964,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.96020746,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"40","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8515028953552246},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6951276659965515},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6268684267997742},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5614172220230103},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5316175818443298},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5047210454940796},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4370485544204712},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36921823024749756},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3490448296070099},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09917280077934265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07868894934654236}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8515028953552246},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6951276659965515},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6268684267997742},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5614172220230103},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5316175818443298},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5047210454940796},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4370485544204712},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36921823024749756},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3490448296070099},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09917280077934265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07868894934654236},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad738","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad738/55520224/btad738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38212995","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38212995","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10796176","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10796176","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10796176/pdf/btad738.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad738","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad738/55520224/btad738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7300000190734863,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1597412403","display_name":null,"funder_award_id":"RGPIN-","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3028888727","display_name":null,"funder_award_id":"RGPIN-2020-0","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3215097295","display_name":null,"funder_award_id":"RGPIN-2020-05733","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3525686075","display_name":null,"funder_award_id":"RGPIN-2020","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G400116904","display_name":null,"funder_award_id":"unknow","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5263005725","display_name":null,"funder_award_id":"RGPIN-2020-0573","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6221715925","display_name":null,"funder_award_id":"RGPIN","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6485536667","display_name":null,"funder_award_id":"RGPIN-2020-05","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8105784103","display_name":null,"funder_award_id":"RGPIN-202","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8875675583","display_name":null,"funder_award_id":"RGPIN 2021-03978","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390793818.pdf"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1966716734","https://openalex.org/W2009672036","https://openalex.org/W2031772330","https://openalex.org/W2102461176","https://openalex.org/W2111647009","https://openalex.org/W2118978333","https://openalex.org/W2123622386","https://openalex.org/W2132926880","https://openalex.org/W2141627824","https://openalex.org/W2149310258","https://openalex.org/W2155194485","https://openalex.org/W2170747616","https://openalex.org/W2192578595","https://openalex.org/W2264362083","https://openalex.org/W2280888683","https://openalex.org/W2722005050","https://openalex.org/W2724371674","https://openalex.org/W2724863579","https://openalex.org/W2727035568","https://openalex.org/W2729580563","https://openalex.org/W2944679105","https://openalex.org/W2949342052","https://openalex.org/W2950954328","https://openalex.org/W2953008890","https://openalex.org/W2955690154","https://openalex.org/W2971405760","https://openalex.org/W2992752586","https://openalex.org/W2995514860","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3009202743","https://openalex.org/W3080498684","https://openalex.org/W3136918052","https://openalex.org/W3144701084","https://openalex.org/W3146944767","https://openalex.org/W3164046276","https://openalex.org/W3164264961","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3197696221","https://openalex.org/W4206247924","https://openalex.org/W4210318145","https://openalex.org/W4220933909","https://openalex.org/W4220952154","https://openalex.org/W4236358448","https://openalex.org/W4284680380","https://openalex.org/W4288089799","https://openalex.org/W4296293027","https://openalex.org/W4307370003","https://openalex.org/W4309362167","https://openalex.org/W4309438076","https://openalex.org/W4316036303","https://openalex.org/W4361217235","https://openalex.org/W6769627184"],"related_works":["https://openalex.org/W1972035260","https://openalex.org/W4301594054","https://openalex.org/W2794488505","https://openalex.org/W2961085424","https://openalex.org/W3125889879","https://openalex.org/W3124422538","https://openalex.org/W2295467472","https://openalex.org/W3046451053","https://openalex.org/W2348534359","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Seq-InSite":[0],"is":[1],"freely":[2],"available":[3],"as":[4,11],"a":[5],"web":[6],"server":[7],"at":[8,26],"http://seq-insite.csd.uwo.ca/":[9],"and":[10,18,24],"free":[12],"source":[13],"code,":[14],"including":[15],"trained":[16],"models":[17],"all":[19],"datasets":[20],"used":[21],"for":[22],"training":[23],"testing,":[25],"https://github.com/lucian-ilie/Seq-InSite.":[27]},"counts_by_year":[{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":3}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
