{"id":"https://openalex.org/W4389452890","doi":"https://doi.org/10.1093/bioinformatics/btad720","title":"NMJ Analyser: a novel method to quantify neuromuscular junction morphology in zebrafish","display_name":"NMJ Analyser: a novel method to quantify neuromuscular junction morphology in zebrafish","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4389452890","doi":"https://doi.org/10.1093/bioinformatics/btad720","pmid":"https://pubmed.ncbi.nlm.nih.gov/38058204"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad720","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad720/54092406/btad720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad720/54092406/btad720.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101558458","display_name":"Jaskaran Singh","orcid":"https://orcid.org/0000-0002-5830-4926"},"institutions":[{"id":"https://openalex.org/I39481719","display_name":"Institut National de la Recherche Scientifique","ror":"https://ror.org/04td37d32","country_code":"CA","type":"education","lineage":["https://openalex.org/I39481719","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jaskaran Singh","raw_affiliation_strings":["Institut National de la Recherche Scientifique (INRS), Centre Armand Frappier Sant\u00e9 Biotechnologie , Laval, QC H7V 1B7, Canada"],"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Scientifique (INRS), Centre Armand Frappier Sant\u00e9 Biotechnologie , Laval, QC H7V 1B7, Canada","institution_ids":["https://openalex.org/I39481719"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081185971","display_name":"Yingzhou Edward Pan","orcid":"https://orcid.org/0000-0001-6995-7239"},"institutions":[{"id":"https://openalex.org/I39481719","display_name":"Institut National de la Recherche Scientifique","ror":"https://ror.org/04td37d32","country_code":"CA","type":"education","lineage":["https://openalex.org/I39481719","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yingzhou Edward Pan","raw_affiliation_strings":["Institut National de la Recherche Scientifique (INRS), Centre Armand Frappier Sant\u00e9 Biotechnologie , Laval, QC H7V 1B7, Canada"],"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Scientifique (INRS), Centre Armand Frappier Sant\u00e9 Biotechnologie , Laval, QC H7V 1B7, Canada","institution_ids":["https://openalex.org/I39481719"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032398566","display_name":"Shunmoogum A. Patten","orcid":"https://orcid.org/0000-0002-2782-3547"},"institutions":[{"id":"https://openalex.org/I39481719","display_name":"Institut National de la Recherche Scientifique","ror":"https://ror.org/04td37d32","country_code":"CA","type":"education","lineage":["https://openalex.org/I39481719","https://openalex.org/I49663120"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shunmoogum A Patten","raw_affiliation_strings":["D\u00e9partement de Neurosciences, Universit\u00e9 de Montr\u00e9al , Montreal, QC, Canada","Institut National de la Recherche Scientifique (INRS), Centre Armand Frappier Sant\u00e9 Biotechnologie , Laval, QC H7V 1B7, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de Neurosciences, Universit\u00e9 de Montr\u00e9al , Montreal, QC, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"Institut National de la Recherche Scientifique (INRS), Centre Armand Frappier Sant\u00e9 Biotechnologie , Laval, QC H7V 1B7, Canada","institution_ids":["https://openalex.org/I39481719"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101558458"],"corresponding_institution_ids":["https://openalex.org/I39481719"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4438,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.81219178,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"39","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12400","display_name":"Neurogenetic and Muscular Disorders Research","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/2716","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10608","display_name":"Neurogenesis and neuroplasticity mechanisms","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/2806","display_name":"Developmental Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neuromuscular-junction","display_name":"Neuromuscular junction","score":0.8675503730773926},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.8652304410934448},{"id":"https://openalex.org/keywords/postsynaptic-potential","display_name":"Postsynaptic potential","score":0.8370519280433655},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.654162585735321},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.5944613814353943},{"id":"https://openalex.org/keywords/neuromuscular-transmission","display_name":"Neuromuscular transmission","score":0.4430958032608032},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3402976393699646},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11009359359741211},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.06198260188102722}],"concepts":[{"id":"https://openalex.org/C2777240379","wikidata":"https://www.wikidata.org/wiki/Q776995","display_name":"Neuromuscular junction","level":2,"score":0.8675503730773926},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.8652304410934448},{"id":"https://openalex.org/C197341189","wikidata":"https://www.wikidata.org/wiki/Q863533","display_name":"Postsynaptic potential","level":3,"score":0.8370519280433655},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.654162585735321},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.5944613814353943},{"id":"https://openalex.org/C3020341438","wikidata":"https://www.wikidata.org/wiki/Q776995","display_name":"Neuromuscular transmission","level":2,"score":0.4430958032608032},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3402976393699646},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11009359359741211},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.06198260188102722},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009468","descriptor_name":"Neuromuscular Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009468","descriptor_name":"Neuromuscular Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009468","descriptor_name":"Neuromuscular Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009468","descriptor_name":"Neuromuscular Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009468","descriptor_name":"Neuromuscular Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009469","descriptor_name":"Neuromuscular Junction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009469","descriptor_name":"Neuromuscular Junction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009469","descriptor_name":"Neuromuscular Junction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009469","descriptor_name":"Neuromuscular Junction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009469","descriptor_name":"Neuromuscular Junction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad720","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad720/54092406/btad720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38058204","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38058204","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10713120","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10713120","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10713120/pdf/btad720.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:espace.inrs.ca:13946","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400579","display_name":"EspaceINRS (National Institute for Scientific Research (Canada))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39481719","host_organization_name":"Institut National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I39481719"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad720","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad720/54092406/btad720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1115082807","display_name":null,"funder_award_id":"CIHR-177940","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G1718774004","display_name":null,"funder_award_id":"Junior","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3030655770","display_name":null,"funder_award_id":"Research Chair","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G3969565085","display_name":null,"funder_award_id":"Foundation","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4714924322","display_name":null,"funder_award_id":"Junior 2","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G5262915324","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G5784215521","display_name":null,"funder_award_id":"Chair","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6282788884","display_name":null,"funder_award_id":"Canadian Institutes of Health","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320311238","display_name":"Fondation Brain Canada","ror":"https://ror.org/01bcmwk98"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334618","display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9","ror":"https://ror.org/02eqrsj93"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389452890.pdf"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1138747448","https://openalex.org/W1573414031","https://openalex.org/W1917415069","https://openalex.org/W1981239255","https://openalex.org/W1988645964","https://openalex.org/W2021899462","https://openalex.org/W2076937853","https://openalex.org/W2093881462","https://openalex.org/W2110498601","https://openalex.org/W2110633413","https://openalex.org/W2119694662","https://openalex.org/W2133059825","https://openalex.org/W2153123353","https://openalex.org/W2167279371","https://openalex.org/W2555504689","https://openalex.org/W2769417204","https://openalex.org/W2793938441","https://openalex.org/W2805056506","https://openalex.org/W2965569283","https://openalex.org/W2985403462","https://openalex.org/W3004127807","https://openalex.org/W3114129111","https://openalex.org/W3203053240","https://openalex.org/W4308523674","https://openalex.org/W4312138116","https://openalex.org/W4372295140"],"related_works":["https://openalex.org/W2011428470","https://openalex.org/W2990636556","https://openalex.org/W2109979652","https://openalex.org/W2291052355","https://openalex.org/W1978516961","https://openalex.org/W350981519","https://openalex.org/W1663538623","https://openalex.org/W2471537914","https://openalex.org/W2156951971","https://openalex.org/W2094054884"],"abstract_inverted_index":{"NMJ":[0],"Analyser":[1],"is":[2],"available":[3],"for":[4],"download":[5],"at":[6],"https://github.com/PattenLab/NMJ-Analyser.git.":[7]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
