{"id":"https://openalex.org/W4389452922","doi":"https://doi.org/10.1093/bioinformatics/btad710","title":"CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images","display_name":"CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4389452922","doi":"https://doi.org/10.1093/bioinformatics/btad710","pmid":"https://pubmed.ncbi.nlm.nih.gov/38060265"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad710","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad710","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad710/54083124/btad710.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad710/54083124/btad710.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055585708","display_name":"Harshavardhan Khare","orcid":"https://orcid.org/0000-0001-8131-0542"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Harshavardhan Khare","raw_affiliation_strings":["Membrane Traffic and Pathogenesis Unit, Department of Cell Biology and Infection, CNRS UMR 3691, Universit\u00e9 de Paris, Institut Pasteur , Paris, 75015, France"],"affiliations":[{"raw_affiliation_string":"Membrane Traffic and Pathogenesis Unit, Department of Cell Biology and Infection, CNRS UMR 3691, Universit\u00e9 de Paris, Institut Pasteur , Paris, 75015, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000944928","display_name":"Nathaly Dongo Mendoza","orcid":"https://orcid.org/0000-0002-6093-0387"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210144718","display_name":"Universidad de Ingenier\u00eda y Tecnolog\u00eda","ror":"https://ror.org/040gykh71","country_code":"PE","type":"education","lineage":["https://openalex.org/I4210144718"]}],"countries":["FR","PE"],"is_corresponding":false,"raw_author_name":"Nathaly Dongo Mendoza","raw_affiliation_strings":["Centro de Investigaci\u00f3n en Bioingenier\u00eda \u2013 BIO, Universidad de Ingenier\u00eda y Tecnolog\u00eda \u2013 UTEC , Lima, 15063, Per\u00fa","Membrane Traffic and Pathogenesis Unit, Department of Cell Biology and Infection, CNRS UMR 3691, Universit\u00e9 de Paris, Institut Pasteur , Paris, 75015, France"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n en Bioingenier\u00eda \u2013 BIO, Universidad de Ingenier\u00eda y Tecnolog\u00eda \u2013 UTEC , Lima, 15063, Per\u00fa","institution_ids":["https://openalex.org/I4210144718"]},{"raw_affiliation_string":"Membrane Traffic and Pathogenesis Unit, Department of Cell Biology and Infection, CNRS UMR 3691, Universit\u00e9 de Paris, Institut Pasteur , Paris, 75015, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053283412","display_name":"Chiara Zurzolo","orcid":"https://orcid.org/0000-0001-6048-6602"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["FR","IT"],"is_corresponding":false,"raw_author_name":"Chiara Zurzolo","raw_affiliation_strings":["Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II , Naples, 80131, Italy","Membrane Traffic and Pathogenesis Unit, Department of Cell Biology and Infection, CNRS UMR 3691, Universit\u00e9 de Paris, Institut Pasteur , Paris, 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II , Naples, 80131, Italy","institution_ids":["https://openalex.org/I71267560"]},{"raw_affiliation_string":"Membrane Traffic and Pathogenesis Unit, Department of Cell Biology and Infection, CNRS UMR 3691, Universit\u00e9 de Paris, Institut Pasteur , Paris, 75015, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5055585708"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I204730241"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3335,"currency":"EUR","value_usd":3596},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13979987,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"39","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9624000191688538,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7889330983161926},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7806551456451416},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7341226935386658},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6867250800132751},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6364771127700806},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6342422962188721},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6312500238418579},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6305191516876221},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5709404945373535},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5637907981872559},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5102839469909668},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4990091323852539},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.48030704259872437},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4637172222137451},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4352586269378662},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4336947500705719},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4334556460380554},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.371826708316803},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13558101654052734},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.0923646092414856}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7889330983161926},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7806551456451416},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7341226935386658},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6867250800132751},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6364771127700806},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6342422962188721},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6312500238418579},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6305191516876221},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5709404945373535},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5637907981872559},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5102839469909668},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4990091323852539},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.48030704259872437},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4637172222137451},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4352586269378662},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4336947500705719},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4334556460380554},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.371826708316803},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13558101654052734},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0923646092414856},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad710","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad710","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad710/54083124/btad710.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38060265","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38060265","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:pasteur-04653898v1","is_oa":true,"landing_page_url":"https://pasteur.hal.science/pasteur-04653898","pdf_url":"https://pasteur.hal.science/pasteur-04653898/document","source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2023, 39 (12), pp.btad710. &#x27E8;10.1093/bioinformatics/btad710&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:10713108","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10713108","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10713108/pdf/btad710.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad710","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad710","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad710/54083124/btad710.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2905377547","display_name":null,"funder_award_id":"17-CONV-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3335229504","display_name":null,"funder_award_id":"Avenir","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5196283127","display_name":null,"funder_award_id":"ANR-16-CONV-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6803667113","display_name":null,"funder_award_id":"ANR-17","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7648214722","display_name":null,"funder_award_id":"ANR-17-CONV-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389452922.pdf"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1756731880","https://openalex.org/W2031654716","https://openalex.org/W2163314583","https://openalex.org/W2224354397","https://openalex.org/W2510908842","https://openalex.org/W2598896450","https://openalex.org/W2625278673","https://openalex.org/W2765232463","https://openalex.org/W2884644484","https://openalex.org/W2894822713","https://openalex.org/W2901563685","https://openalex.org/W2989764449","https://openalex.org/W3048087138","https://openalex.org/W3101192230","https://openalex.org/W3108229057","https://openalex.org/W3110513085","https://openalex.org/W3133671129","https://openalex.org/W4225888828","https://openalex.org/W4306893537","https://openalex.org/W4309837912","https://openalex.org/W4362636855","https://openalex.org/W6838054905"],"related_works":["https://openalex.org/W3200088983","https://openalex.org/W2243008534","https://openalex.org/W2561596083","https://openalex.org/W3161088745","https://openalex.org/W339959573","https://openalex.org/W135428843","https://openalex.org/W2948527927","https://openalex.org/W2135196975","https://openalex.org/W2990762041","https://openalex.org/W2624709009"],"abstract_inverted_index":{"CellWalker":[0],"source":[1],"code":[2],"is":[3],"available":[4],"on":[5],"GitHub":[6],"(https://github.com/utraf-pasteur-institute/Cellwalker-blender":[7],"and":[8],"https://github.com/utraf-pasteur-institute/Cellwalker-notebooks)":[9],"under":[10],"a":[11],"GPL-3":[12],"license.":[13]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
