{"id":"https://openalex.org/W4388845104","doi":"https://doi.org/10.1093/bioinformatics/btad703","title":"Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification","display_name":"Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification","publication_year":2023,"publication_date":"2023-11-01","ids":{"openalex":"https://openalex.org/W4388845104","doi":"https://doi.org/10.1093/bioinformatics/btad703","pmid":"https://pubmed.ncbi.nlm.nih.gov/37988152"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad703","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad703","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad703/53667238/btad703.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad703/53667238/btad703.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008738759","display_name":"Bastian Pfeifer","orcid":"https://orcid.org/0000-0001-7035-9535"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Bastian Pfeifer","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Documentation, Medical University Graz , Graz 8036, Austria"],"raw_orcid":"https://orcid.org/0000-0001-7035-9535","affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University Graz , Graz 8036, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035739356","display_name":"Hryhorii Chereda","orcid":"https://orcid.org/0000-0003-1103-0136"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hryhorii Chereda","raw_affiliation_strings":["Medical Bioinformatics, University Medical Center G\u00f6ttingen , G\u00f6ttingen 37077, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1103-0136","affiliations":[{"raw_affiliation_string":"Medical Bioinformatics, University Medical Center G\u00f6ttingen , G\u00f6ttingen 37077, Germany","institution_ids":["https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060505381","display_name":"Roman Martin","orcid":"https://orcid.org/0000-0001-7678-7856"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roman Martin","raw_affiliation_strings":["Data Science in Biomedicine, Department of Mathematics and Computer Science, University of Marburg , Marburg 35043, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7678-7856","affiliations":[{"raw_affiliation_string":"Data Science in Biomedicine, Department of Mathematics and Computer Science, University of Marburg , Marburg 35043, Germany","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078003904","display_name":"Anna Saranti","orcid":"https://orcid.org/0000-0002-1085-8428"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Anna Saranti","raw_affiliation_strings":["Human-Centered AI Lab, University of Natural Resources and Life Sciences , Vienna 1190, Austria","Institute for Medical Informatics, Statistics and Documentation, Medical University Graz , Graz 8036, Austria"],"raw_orcid":"https://orcid.org/0000-0002-1085-8428","affiliations":[{"raw_affiliation_string":"Human-Centered AI Lab, University of Natural Resources and Life Sciences , Vienna 1190, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University Graz , Graz 8036, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047726998","display_name":"Sandra Clemens","orcid":"https://orcid.org/0000-0002-9710-1152"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sandra Clemens","raw_affiliation_strings":["Data Science in Biomedicine, Department of Mathematics and Computer Science, University of Marburg , Marburg 35043, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9710-1152","affiliations":[{"raw_affiliation_string":"Data Science in Biomedicine, Department of Mathematics and Computer Science, University of Marburg , Marburg 35043, Germany","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087041634","display_name":"Anne-Christin Hauschild","orcid":"https://orcid.org/0000-0002-7499-4373"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anne-Christin Hauschild","raw_affiliation_strings":["Institute for Medical Informatics, University Medical Center G\u00f6ttingen , G\u00f6ttingen 37075, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, University Medical Center G\u00f6ttingen , G\u00f6ttingen 37075, Germany","institution_ids":["https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017944645","display_name":"Tim Bei\u00dfbarth","orcid":"https://orcid.org/0000-0001-6509-2143"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Bei\u00dfbarth","raw_affiliation_strings":["Medical Bioinformatics, University Medical Center G\u00f6ttingen , G\u00f6ttingen 37077, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Bioinformatics, University Medical Center G\u00f6ttingen , G\u00f6ttingen 37077, Germany","institution_ids":["https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034657358","display_name":"Andreas Holzinger","orcid":"https://orcid.org/0000-0002-6786-5194"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Andreas Holzinger","raw_affiliation_strings":["Human-Centered AI Lab, University of Natural Resources and Life Sciences , Vienna 1190, Austria","Institute for Medical Informatics, Statistics and Documentation, Medical University Graz , Graz 8036, Austria"],"raw_orcid":"https://orcid.org/0000-0002-6786-5194","affiliations":[{"raw_affiliation_string":"Human-Centered AI Lab, University of Natural Resources and Life Sciences , Vienna 1190, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Documentation, Medical University Graz , Graz 8036, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060650201","display_name":"Dominik Heider","orcid":"https://orcid.org/0000-0002-3108-8311"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominik Heider","raw_affiliation_strings":["Data Science in Biomedicine, Department of Mathematics and Computer Science, University of Marburg , Marburg 35043, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science in Biomedicine, Department of Mathematics and Computer Science, University of Marburg , Marburg 35043, Germany","institution_ids":["https://openalex.org/I161103922"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5008738759"],"corresponding_institution_ids":["https://openalex.org/I202276237"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.9762,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.95003278,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"39","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.6316999793052673,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.6316999793052673,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.1517000049352646,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.08940000087022781,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7958572506904602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7748264074325562},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.7172865867614746},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5314853191375732},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5289889574050903},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.510941207408905},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4927273094654083},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46575552225112915},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4597175121307373},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4501325488090515},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.4445558190345764},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4104686975479126},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.16462448239326477},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10074609518051147}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7958572506904602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7748264074325562},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.7172865867614746},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5314853191375732},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5289889574050903},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.510941207408905},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4927273094654083},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46575552225112915},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4597175121307373},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4501325488090515},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.4445558190345764},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4104686975479126},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.16462448239326477},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10074609518051147},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad703","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad703","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad703/53667238/btad703.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37988152","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37988152","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10684359","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10684359","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10684359/pdf/btad703.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/139137","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/139137","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"yes"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad703","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad703","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad703/53667238/btad703.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5099999904632568,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G575360465","display_name":null,"funder_award_id":"P-32554","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G7695462251","display_name":null,"funder_award_id":"01KD2208A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8029424273","display_name":null,"funder_award_id":"826078","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388845104.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W2122863289","https://openalex.org/W2402601207","https://openalex.org/W2509030308","https://openalex.org/W2760946358","https://openalex.org/W2952667233","https://openalex.org/W2969756003","https://openalex.org/W2970119293","https://openalex.org/W2972317931","https://openalex.org/W3101369110","https://openalex.org/W3133653953","https://openalex.org/W3203901993","https://openalex.org/W3213384164","https://openalex.org/W3214661038","https://openalex.org/W4210284152","https://openalex.org/W4296780664","https://openalex.org/W4311760380","https://openalex.org/W4318022925","https://openalex.org/W4392648032","https://openalex.org/W6767288045"],"related_works":["https://openalex.org/W2789551765","https://openalex.org/W2794896638","https://openalex.org/W1807784185","https://openalex.org/W45170056","https://openalex.org/W3202800081","https://openalex.org/W1909207154","https://openalex.org/W3124390867","https://openalex.org/W3101614107","https://openalex.org/W3204228978","https://openalex.org/W1514365828"],"abstract_inverted_index":{"SUMMARY:":[0],"Federated":[1],"learning":[2,29],"enables":[3],"collaboration":[4],"in":[5,21,26,54,95],"medicine,":[6],"where":[7,71],"data":[8,20,39,152],"is":[9,146],"scattered":[10],"across":[11],"multiple":[12],"centers":[13],"without":[14],"the":[15,19,55,72,75,122,135,151],"need":[16],"to":[17,34,90,99],"aggregate":[18],"a":[22,35,60,66,125],"central":[23],"cloud.":[24],"While,":[25],"general,":[27],"machine":[28],"models":[30,103],"can":[31,62,87],"be":[32,63,88],"applied":[33],"wide":[36],"range":[37],"of":[38,108,128],"types,":[40],"graph":[41],"neural":[42],"networks":[43,106],"(GNNs)":[44],"are":[45,51],"particularly":[46],"developed":[47],"for":[48],"graphs,":[49],"which":[50,86],"very":[52],"common":[53],"biomedical":[56],"domain.":[57],"For":[58],"instance,":[59],"patient":[61],"represented":[64],"by":[65],"protein-protein":[67],"interaction":[68],"(PPI)":[69],"network":[70],"nodes":[73],"contain":[74],"patient-specific":[76],"omics":[77],"features.":[78],"Here,":[79],"we":[80],"present":[81],"our":[82],"Ensemble-GNN":[83,97],"software":[84],"package,":[85],"used":[89],"deploy":[91],"federated,":[92],"ensemble-based":[93],"GNNs":[94],"Python.":[96],"allows":[98],"quickly":[100],"build":[101],"predictive":[102],"utilizing":[104],"PPI":[105],"consisting":[107],"various":[109],"node":[110],"features":[111],"such":[112],"as":[113],"gene":[114],"expression":[115],"and/or":[116],"DNA":[117],"methylation.":[118],"We":[119],"exemplary":[120],"show":[121],"results":[123],"from":[124,134],"public":[126],"dataset":[127],"981":[129],"patients":[130],"and":[131,150],"8469":[132],"genes":[133],"Cancer":[136],"Genome":[137],"Atlas":[138],"(TCGA).":[139],"AVAILABILITY":[140],"AND":[141],"IMPLEMENTATION:":[142],"The":[143],"source":[144],"code":[145],"available":[147],"at":[148,153],"https://github.com/pievos101/Ensemble-GNN,":[149],"Zenodo":[154],"(DOI:":[155],"10.5281/zenodo.8305122).":[156]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10}],"updated_date":"2026-05-23T08:51:43.019350","created_date":"2025-10-10T00:00:00"}
