{"id":"https://openalex.org/W4388557180","doi":"https://doi.org/10.1093/bioinformatics/btad677","title":"AFRbase: a database of protein mutations responsible for antifungal resistance","display_name":"AFRbase: a database of protein mutations responsible for antifungal resistance","publication_year":2023,"publication_date":"2023-11-01","ids":{"openalex":"https://openalex.org/W4388557180","doi":"https://doi.org/10.1093/bioinformatics/btad677","pmid":"https://pubmed.ncbi.nlm.nih.gov/37947313"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad677","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad677","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad677/53050069/btad677.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad677/53050069/btad677.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101397240","display_name":"Aakriti Jain","orcid":"https://orcid.org/0000-0003-2451-4551"},"institutions":[{"id":"https://openalex.org/I110166357","display_name":"University of Delhi","ror":"https://ror.org/04gzb2213","country_code":"IN","type":"education","lineage":["https://openalex.org/I110166357"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Aakriti Jain","raw_affiliation_strings":["Department of Biophysics, University of Delhi South Campus , New Delhi 110021, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Delhi South Campus , New Delhi 110021, India","institution_ids":["https://openalex.org/I110166357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045186073","display_name":"Neelja Singhal","orcid":"https://orcid.org/0000-0003-0851-6434"},"institutions":[{"id":"https://openalex.org/I110166357","display_name":"University of Delhi","ror":"https://ror.org/04gzb2213","country_code":"IN","type":"education","lineage":["https://openalex.org/I110166357"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Neelja Singhal","raw_affiliation_strings":["Department of Biophysics, University of Delhi South Campus , New Delhi 110021, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Delhi South Campus , New Delhi 110021, India","institution_ids":["https://openalex.org/I110166357"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019181731","display_name":"Manish Kumar","orcid":"https://orcid.org/0000-0002-7936-9892"},"institutions":[{"id":"https://openalex.org/I110166357","display_name":"University of Delhi","ror":"https://ror.org/04gzb2213","country_code":"IN","type":"education","lineage":["https://openalex.org/I110166357"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Manish Kumar","raw_affiliation_strings":["Department of Biophysics, University of Delhi South Campus , New Delhi 110021, India"],"raw_orcid":"https://orcid.org/0000-0002-7936-9892","affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Delhi South Campus , New Delhi 110021, India","institution_ids":["https://openalex.org/I110166357"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5019181731"],"corresponding_institution_ids":["https://openalex.org/I110166357"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.4959,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.93764921,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"39","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.772599995136261,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.772599995136261,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11037","display_name":"Fungal Infections and Studies","score":0.054099999368190765,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.013500000350177288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8990243673324585},{"id":"https://openalex.org/keywords/antifungal-drug","display_name":"Antifungal drug","score":0.6208249926567078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.56493079662323},{"id":"https://openalex.org/keywords/antifungal","display_name":"Antifungal","score":0.5513012409210205},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5255771279335022},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.5005593299865723},{"id":"https://openalex.org/keywords/resistance","display_name":"Resistance (ecology)","score":0.45811644196510315},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.44894668459892273},{"id":"https://openalex.org/keywords/point-mutation","display_name":"Point mutation","score":0.4465929865837097},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40999940037727356},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36710986495018005},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33742713928222656},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.275638222694397},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2599540650844574},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.12516173720359802},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08465465903282166}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8990243673324585},{"id":"https://openalex.org/C2991737395","wikidata":"https://www.wikidata.org/wiki/Q578726","display_name":"Antifungal drug","level":3,"score":0.6208249926567078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.56493079662323},{"id":"https://openalex.org/C2779548794","wikidata":"https://www.wikidata.org/wiki/Q578726","display_name":"Antifungal","level":2,"score":0.5513012409210205},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5255771279335022},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.5005593299865723},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.45811644196510315},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.44894668459892273},{"id":"https://openalex.org/C176944494","wikidata":"https://www.wikidata.org/wiki/Q1415380","display_name":"Point mutation","level":4,"score":0.4465929865837097},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40999940037727356},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36710986495018005},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33742713928222656},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.275638222694397},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2599540650844574},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.12516173720359802},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08465465903282166}],"mesh":[{"descriptor_ui":"D000935","descriptor_name":"Antifungal Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000935","descriptor_name":"Antifungal Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000935","descriptor_name":"Antifungal Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025141","descriptor_name":"Drug Resistance, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D025141","descriptor_name":"Drug Resistance, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D025141","descriptor_name":"Drug Resistance, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad677","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad677","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad677/53050069/btad677.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37947313","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37947313","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10656092","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10656092","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10656092/pdf/btad677.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad677","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad677","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad677/53050069/btad677.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2865055512","display_name":null,"funder_award_id":"ISRM/12(38)/2022","funder_id":"https://openalex.org/F4320320720","funder_display_name":"Indian Council of Medical Research"},{"id":"https://openalex.org/G4784179740","display_name":null,"funder_award_id":"ISRM/12","funder_id":"https://openalex.org/F4320320767","funder_display_name":"University Grants Commission"},{"id":"https://openalex.org/G4892723920","display_name":null,"funder_award_id":"BMI/11(29)/2022","funder_id":"https://openalex.org/F4320320720","funder_display_name":"Indian Council of Medical Research"}],"funders":[{"id":"https://openalex.org/F4320320720","display_name":"Indian Council of Medical Research","ror":"https://ror.org/0492wrx28"},{"id":"https://openalex.org/F4320320767","display_name":"University Grants Commission","ror":"https://ror.org/04p800546"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388557180.pdf","grobid_xml":"https://content.openalex.org/works/W4388557180.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W2006386982","https://openalex.org/W2066630464","https://openalex.org/W2107794472","https://openalex.org/W2594084827","https://openalex.org/W2767031614","https://openalex.org/W2800823736","https://openalex.org/W2914131906","https://openalex.org/W2997426704","https://openalex.org/W3007103610","https://openalex.org/W3032047811","https://openalex.org/W3034821563","https://openalex.org/W3038007809","https://openalex.org/W3181892255","https://openalex.org/W3213604751","https://openalex.org/W3215123698","https://openalex.org/W4220759933","https://openalex.org/W4220972968","https://openalex.org/W4226099595","https://openalex.org/W4226189767","https://openalex.org/W6745186386"],"related_works":["https://openalex.org/W1445902623","https://openalex.org/W2079480848","https://openalex.org/W2368727485","https://openalex.org/W2093055820","https://openalex.org/W2375728746","https://openalex.org/W4238282688","https://openalex.org/W2076025899","https://openalex.org/W2415210808","https://openalex.org/W2358781978","https://openalex.org/W2507767487"],"abstract_inverted_index":{"MOTIVATION:":[0],"Fungal":[1],"pathogens":[2],"are":[3],"known":[4],"to":[5,81,165,189,211],"cause":[6],"life":[7],"threatening":[8],"invasive":[9],"infections":[10],"with":[11,173,240],"rising":[12],"global":[13],"mortality":[14],"rates.":[15],"Besides,":[16],"the":[17,33,62,73,78,82,89,99,115,155,167,213,241],"indiscriminate":[18],"use":[19],"of":[20,44,84,97,118,134,152,208,215,217,223,235,243],"antifungals":[21],"in":[22,32,49,61,154,232],"both":[23,139,190],"clinics":[24],"and":[25,57,123,130,142,157,170,181,192,210],"agriculture":[26],"has":[27],"promoted":[28],"antifungal":[29,85,103,107,119,218],"drug":[30,39],"resistance":[31,40,71,108,120,247],"last":[34],"decade.":[35],"Fungi":[36],"can":[37,69,186],"show":[38],"by":[41],"a":[42,95,127,147],"variety":[43],"mechanisms.":[45],"But":[46],"primary":[47],"driver":[48],"all":[50,98],"these":[51],"hitherto":[52],"documented":[53],"mechanisms":[54,79],"is":[55,72,112,248,254],"stable":[56],"heritable":[58],"point":[59],"mutations":[60,67,100,153,230],"key":[63],"proteins.":[64],"Therefore,":[65],"cataloguing":[66],"that":[68],"confer":[70],"first":[74],"step":[75],"toward":[76],"understanding":[77],"leading":[80],"emergence":[83],"resistance.":[86,104,219],"RESULTS:":[87],"In":[88],"present,":[90],"work":[91],"we":[92,197],"have":[93,126],"described":[94],"database":[96,109,258],"responsible":[101],"for":[102,150,163,204],"Named":[105],"as":[106,196,200],"(AFRbase),":[110],"it":[111,161,199],"better":[113],"than":[114],"existing":[116],"databases":[117,178],"namely,":[121],"FunResDB":[122],"MARDy":[124],"which":[125,246],"limited":[128],"scope":[129],"inadequate":[131],"information.":[132],"Data":[133],"AFRbase":[135,145,185,224,253],"was":[136],"collected":[137],"using":[138],"text":[140],"mining":[141],"manual":[143],"curation.":[144],"provides":[146],"separate":[148],"window":[149],"visualization":[151],"2D":[156],"3D":[158],"formats":[159],"making":[160],"easy":[162],"researchers":[164],"analyze":[166],"mutation":[168],"data":[169],"ensures":[171],"interoperability":[172],"other":[174],"standard":[175],"molecular":[176],"biology":[177],"like":[179],"NCBI":[180],"UniProtKB.":[182],"We":[183],"hope":[184],"be":[187],"useful":[188],"clinicians":[191],"basic":[193],"biomedical":[194],"scientists":[195],"envision":[198],"an":[201,255],"important":[202],"resource":[203],"genotypic":[205],"susceptibility":[206],"testing":[207],"fungi":[209],"study/predict":[212],"course":[214],"evolution":[216],"The":[220],"current":[221],"version":[222],"contains":[225],"manually":[226],"curated":[227],"3691":[228],"unique":[229],"present":[231],"29":[233],"proteins":[234],"32":[236],"fungal":[237],"species":[238],"along":[239],"information":[242],"drugs":[244],"against":[245],"caused.":[249],"AVAILABILITY":[250],"AND":[251],"IMPLEMENTATION:":[252],"open":[256],"access":[257],"available":[259],"at":[260],"http://proteininformatics.org/mkumar/afrbase/.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5}],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2025-10-10T00:00:00"}
