{"id":"https://openalex.org/W4388422385","doi":"https://doi.org/10.1093/bioinformatics/btad664","title":"ORI-Explorer: a unified cell-specific tool for origin of replication sites prediction by feature fusion","display_name":"ORI-Explorer: a unified cell-specific tool for origin of replication sites prediction by feature fusion","publication_year":2023,"publication_date":"2023-10-31","ids":{"openalex":"https://openalex.org/W4388422385","doi":"https://doi.org/10.1093/bioinformatics/btad664","pmid":"https://pubmed.ncbi.nlm.nih.gov/37929975"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad664","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad664","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad664/52713673/btad664.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad664/52713673/btad664.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069825308","display_name":"Zeeshan Abbas","orcid":"https://orcid.org/0000-0003-1472-183X"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Zeeshan Abbas","raw_affiliation_strings":["Department of Electronics and Information Engineering, Jeonbuk National University , Jeonju 54896, South Korea","Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, 54896, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University , Jeonju 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008434490","display_name":"Mobeen Ur Rehman","orcid":"https://orcid.org/0000-0003-0914-7132"},"institutions":[{"id":"https://openalex.org/I176601375","display_name":"Khalifa University of Science and Technology","ror":"https://ror.org/05hffr360","country_code":"AE","type":"education","lineage":["https://openalex.org/I176601375"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Mobeen Ur Rehman","raw_affiliation_strings":["Khalifa University Center for Autonomous Robotic Systems (KUCARS), Khalifa University , Abu Dhabi, United Arab Emirates"],"affiliations":[{"raw_affiliation_string":"Khalifa University Center for Autonomous Robotic Systems (KUCARS), Khalifa University , Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I176601375"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008953921","display_name":"Hilal Tayara","orcid":"https://orcid.org/0000-0001-5678-3479"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hilal Tayara","raw_affiliation_strings":["School of International Engineering and Science, Jeonbuk National University , Jeonju 54896, South Korea","School of International Engineering and Science, Jeonbuk National University, Jeonju, 54896, South Korea"],"affiliations":[{"raw_affiliation_string":"School of International Engineering and Science, Jeonbuk National University , Jeonju 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"School of International Engineering and Science, Jeonbuk National University, Jeonju, 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031342322","display_name":"Kil To Chong","orcid":"https://orcid.org/0000-0002-1952-0001"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kil To Chong","raw_affiliation_strings":["Advances Electronics and Information Research Center, Jeonbuk National University , Jeonju 54896, South Korea","Department of Electronics and Information Engineering, Jeonbuk National University , Jeonju 54896, South Korea","Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, 54896, South Korea","Advances Electronics and Information Research Center, Jeonbuk National University, Jeonju, 54896, South Korea"],"affiliations":[{"raw_affiliation_string":"Advances Electronics and Information Research Center, Jeonbuk National University , Jeonju 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University , Jeonju 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"Advances Electronics and Information Research Center, Jeonbuk National University, Jeonju, 54896, South Korea","institution_ids":["https://openalex.org/I80611190"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069825308"],"corresponding_institution_ids":["https://openalex.org/I80611190"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.5884,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.90028793,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7270902991294861},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6127813458442688},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5182926058769226},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4755789339542389},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45435962080955505},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4532897472381592},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.43897777795791626}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7270902991294861},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6127813458442688},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5182926058769226},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4755789339542389},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45435962080955505},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4532897472381592},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.43897777795791626},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018741","descriptor_name":"Replication Origin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018741","descriptor_name":"Replication Origin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018741","descriptor_name":"Replication Origin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad664","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad664","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad664/52713673/btad664.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37929975","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37929975","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10639035","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10639035","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10639035/pdf/btad664.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad664","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad664","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad664/52713673/btad664.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3034753964","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G342704958","display_name":null,"funder_award_id":"funded","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G3510917025","display_name":null,"funder_award_id":"2022R1","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G4069871152","display_name":null,"funder_award_id":"2020R1A2C2005612","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G4205419206","display_name":null,"funder_award_id":"2020R1A2C2005612","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G4910795082","display_name":null,"funder_award_id":"2022R1G1A1004613","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6073835783","display_name":null,"funder_award_id":"2020R1A2C2005612","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388422385.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W2025847444","https://openalex.org/W2064675550","https://openalex.org/W2066915800","https://openalex.org/W2104216356","https://openalex.org/W2104539744","https://openalex.org/W2132401124","https://openalex.org/W2147082907","https://openalex.org/W2165710627","https://openalex.org/W2520682509","https://openalex.org/W2755050428","https://openalex.org/W2771200722","https://openalex.org/W2787975097","https://openalex.org/W2804489036","https://openalex.org/W2891925836","https://openalex.org/W2912432706","https://openalex.org/W2934605085","https://openalex.org/W3004933906","https://openalex.org/W3007150491","https://openalex.org/W3048429615","https://openalex.org/W3096599651","https://openalex.org/W3164183400","https://openalex.org/W3185631424","https://openalex.org/W4307655495","https://openalex.org/W4312123492","https://openalex.org/W4324129712"],"related_works":["https://openalex.org/W3147584709","https://openalex.org/W2961085424","https://openalex.org/W2391251536","https://openalex.org/W2977677679","https://openalex.org/W2362198218","https://openalex.org/W1992327129","https://openalex.org/W1982750869","https://openalex.org/W2019521278","https://openalex.org/W1984922432","https://openalex.org/W2381986121"],"abstract_inverted_index":{"The":[0],"used":[1],"datasets":[2],"along":[3],"with":[4],"the":[5],"source":[6],"code":[7],"are":[8],"made":[9],"available":[10],"through":[11],"https://github.com/Z-Abbas/ORI-Explorer":[12],"and":[13],"https://zenodo.org/record/8358679.":[14]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
