{"id":"https://openalex.org/W4387701156","doi":"https://doi.org/10.1093/bioinformatics/btad627","title":"Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites","display_name":"Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites","publication_year":2023,"publication_date":"2023-10-17","ids":{"openalex":"https://openalex.org/W4387701156","doi":"https://doi.org/10.1093/bioinformatics/btad627"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad627","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad627/52191158/btad627.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad627/52191158/btad627.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026552847","display_name":"Shihu Jiao","orcid":"https://orcid.org/0000-0001-7428-4876"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shihu Jiao","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","Department of Computer Science, University of Tsukuba, Tsukuba, 3058577, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063256241","display_name":"Xiucai Ye","orcid":"https://orcid.org/0000-0002-5547-3919"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Xiucai Ye","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","Department of Computer Science, University of Tsukuba, Tsukuba, 3058577, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016729401","display_name":"Chunyan Ao","orcid":"https://orcid.org/0000-0002-3008-6357"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunyan Ao","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038336830","display_name":"Tetsuya Sakurai","orcid":"https://orcid.org/0000-0002-5789-7547"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuya Sakurai","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","Department of Computer Science, University of Tsukuba, Tsukuba, 3058577, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210123686","display_name":"Quzhou University","ror":"https://ror.org/024nfx323","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210123686"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China","Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China , Quzhou, China"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China , Quzhou, China","institution_ids":["https://openalex.org/I4210123686","https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100622723","display_name":"Lei Xu","orcid":"https://orcid.org/0009-0008-6868-5663"},"institutions":[{"id":"https://openalex.org/I182722699","display_name":"Shenzhen Polytechnic University","ror":"https://ror.org/00d2w9g53","country_code":"CN","type":"education","lineage":["https://openalex.org/I182722699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Xu","raw_affiliation_strings":["School of Electronic and Communication Engineering, Shenzhen Polytechnic , No. 4089 Shahexi Road , Shenzhen 518000, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Communication Engineering, Shenzhen Polytechnic , No. 4089 Shahexi Road , Shenzhen 518000, China","institution_ids":["https://openalex.org/I182722699"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026552847"],"corresponding_institution_ids":["https://openalex.org/I146399215"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1472,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.87693381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"39","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6176930665969849},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.6033990383148193},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5708568096160889},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.540120005607605},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4851601719856262},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4829256236553192},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.41531726717948914},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35471439361572266},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3014512062072754},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12201935052871704}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6176930665969849},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.6033990383148193},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5708568096160889},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.540120005607605},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4851601719856262},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4829256236553192},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.41531726717948914},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35471439361572266},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3014512062072754},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12201935052871704},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad627","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad627/52191158/btad627.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10628388","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10628388","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10628388/pdf/btad627.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:tsukuba.repo.nii.ac.jp:02009173","is_oa":true,"landing_page_url":"http://hdl.handle.net/2241/0002009173","pdf_url":"https://tsukuba.repo.nii.ac.jp/record/2009173/files/Bioinformatics_39-11.pdf","source":{"id":"https://openalex.org/S4306402076","display_name":"Terrestrial Environment Research Center (University of Tsukuba)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I146399215","host_organization_name":"University of Tsukuba","host_organization_lineage":["https://openalex.org/I146399215"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad627","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad627/52191158/btad627.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.6600000262260437,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1042428003","display_name":"\u9162\u9178\u83cc\u306e\u70ad\u6c34\u5316\u7269\u4ee3\u8b1d","funder_award_id":"62250","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1069223013","display_name":null,"funder_award_id":"JSPS KAKENHI","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1160716697","display_name":null,"funder_award_id":"KAKENHI [","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1293060989","display_name":null,"funder_award_id":"JPMJPF2017","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1781040916","display_name":"\u30a4\u30bd\u30e1\u30e9\u30fc\u30bc\u306e\u57fa\u790e\u7684\u7814\u7a76","funder_award_id":"62271","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1950104911","display_name":null,"funder_award_id":"JP23H03411","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2681032783","display_name":"\u30de\u30fc\u30b7\u30e3\u30eb\u7d4c\u6e08\u5b66\u306e\u4f53\u7cfb","funder_award_id":"31004","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3217782910","display_name":"\u6587\u660e\u7406\u8ad6\u306e\u4f53\u7cfb\u7684\u7814\u7a76","funder_award_id":"131004","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3984233681","display_name":"\u30ec\u30fc\u30b6\u30fc\u5149","funder_award_id":"22020","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4512419088","display_name":"\u6838\u878d\u5408\u7089\u7528\u8d85\u96fb\u5c0e\u30de\u30b0\u30cd\u30c3\u30c8\u306e\u5b89\u5b9a\u5316\u306b\u95a2\u3059\u308b\u96fb\u78c1\u73fe\u8c61\u306e\u7814\u7a76","funder_award_id":"220208","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4524977458","display_name":"\u30b8\u30d9\u30ec\u30ea\u30f3\u306e\u6838\u9178\u4ee3\u8b1d\u306b\u53ca\u307c\u3059\u5f71\u97ff\u306b\u3064\u3044\u3066","funder_award_id":"62131","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G457114669","display_name":null,"funder_award_id":"62202081","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4636223006","display_name":null,"funder_award_id":"JSPS KAK","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4935157247","display_name":"\u30de\u30a4\u30af\u30ed\u30dd\u30f3\u30d7\u306e\u8a66\u4f5c\u7814\u7a76","funder_award_id":"50028","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4972804610","display_name":"\u5317\u6d77\u9053\u7523\u82d4\u985e\u306e\u5206\u985e\u30fb\u751f\u614b\u5b66\u7684\u7814\u7a76","funder_award_id":"25002","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5082899461","display_name":null,"funder_award_id":"62271329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5133105583","display_name":null,"funder_award_id":"62131004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5321231671","display_name":null,"funder_award_id":"6227132","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5506463476","display_name":null,"funder_award_id":"JP22K1","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6118676512","display_name":"\u30c7\u30fc\u30bf\u30b3\u30e9\u30dc\u30ec\u30fc\u30b7\u30e7\u30f3\u89e3\u6790\u306b\u3088\u308b\u5206\u6563\u5354\u8abf\u7279\u5fb4\u91cf\u9078\u629e\u624b\u6cd5\u306e\u7814\u7a76","funder_award_id":"22K12144","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6446245973","display_name":null,"funder_award_id":"62250028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7184098351","display_name":null,"funder_award_id":"JP22K12144","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387701156.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1555148682","https://openalex.org/W1596275185","https://openalex.org/W1762366815","https://openalex.org/W1993450321","https://openalex.org/W2101234009","https://openalex.org/W2130410032","https://openalex.org/W2156125289","https://openalex.org/W2421230118","https://openalex.org/W2512830039","https://openalex.org/W2635415917","https://openalex.org/W2725741216","https://openalex.org/W2742750032","https://openalex.org/W2780936345","https://openalex.org/W2802876915","https://openalex.org/W2889326414","https://openalex.org/W2900206619","https://openalex.org/W2994464657","https://openalex.org/W3004280078","https://openalex.org/W3006645647","https://openalex.org/W3020440546","https://openalex.org/W3022285953","https://openalex.org/W3037945517","https://openalex.org/W3038011569","https://openalex.org/W3101668228","https://openalex.org/W3109351054","https://openalex.org/W3134163647","https://openalex.org/W3154372950","https://openalex.org/W3173360330","https://openalex.org/W3199167353","https://openalex.org/W4225816365","https://openalex.org/W4237593698","https://openalex.org/W4310601281","https://openalex.org/W6633204899","https://openalex.org/W6775565571"],"related_works":["https://openalex.org/W2965546495","https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2761785940","https://openalex.org/W2110523656","https://openalex.org/W1482209366","https://openalex.org/W2521627374"],"abstract_inverted_index":{"Abstract":[0],"Motivation":[1],"The":[2,34,129],"rapid":[3],"and":[4,28,52,71,209,236,243],"extensive":[5],"transmission":[6],"of":[7,26,36,84,132,138,149,168,175,179,230],"the":[8,46,53,136,146,158,166,173,183,205,214,223,228],"severe":[9],"acute":[10],"respiratory":[11],"syndrome":[12],"coronavirus":[13],"2":[14],"(SARS-CoV-2)":[15],"has":[16],"led":[17],"to":[18,116,190],"an":[19,30,41],"unprecedented":[20],"global":[21,169],"health":[22],"emergency,":[23],"affecting":[24],"millions":[25],"people":[27],"causing":[29],"immense":[31],"socioeconomic":[32],"impact.":[33],"identification":[35],"SARS-CoV-2":[37,85,233],"phosphorylation":[38,100,118,220,231],"sites":[39,68,119,221],"plays":[40],"important":[42],"role":[43],"in":[44,56,87,98,102,120,135,194,226,232],"unraveling":[45],"complex":[47],"molecular":[48],"mechanisms":[49],"behind":[50],"infection":[51,86],"resulting":[54],"alterations":[55],"host":[57,103,122],"cell":[58],"pathways.":[59],"However,":[60],"currently":[61],"available":[62,240],"prediction":[63,207],"tools":[64,208],"for":[65],"identifying":[66],"these":[67],"lack":[69],"accuracy":[70,174],"efficiency.":[72],"Results":[73],"In":[74,156],"this":[75],"study,":[76],"we":[77],"presented":[78],"a":[79,88,106,139],"comprehensive":[80],"biological":[81],"function":[82],"analysis":[83,178],"clonal":[89],"human":[90,121],"lung":[91],"epithelial":[92],"A549":[93],"cell,":[94],"revealing":[95],"dramatic":[96],"changes":[97],"protein":[99,154],"pathways":[101],"cells.":[104],"Moreover,":[105],"novel":[107],"deep":[108],"learning":[109,141,185],"predictor":[110],"called":[111],"PSPred-ALE":[112,133,203,238],"is":[113,239],"specifically":[114],"designed":[115],"identify":[117,219],"cells":[123],"that":[124,164,182,202],"are":[125,188],"infected":[126],"with":[127],"SARS-CoV-2.":[128],"key":[130],"idea":[131],"lies":[134],"use":[137],"self-adaptive":[140,184],"embedding":[142,186],"algorithm,":[143],"which":[144],"enables":[145,165],"automatic":[147],"extraction":[148],"context":[150],"sequential":[151],"features":[152,180,187,193],"from":[153],"sequences.":[155],"addition,":[157],"tool":[159],"uses":[160],"multihead":[161],"attention":[162],"module":[163],"capturing":[167,195],"information,":[170],"further":[171],"improving":[172],"predictions.":[176],"Comparative":[177],"demonstrated":[181],"superior":[189],"hand-crafted":[191],"statistical":[192],"discriminative":[196],"sequence":[197],"information.":[198],"Benchmarking":[199],"comparison":[200],"shows":[201],"outperforms":[204],"state-of-the-art":[206],"achieves":[210],"robust":[211],"performance.":[212],"Therefore,":[213],"proposed":[215],"model":[216],"can":[217],"effectively":[218],"assistant":[222],"biomedical":[224],"scientists":[225],"understanding":[227],"mechanism":[229],"infection.":[234],"Availability":[235],"implementation":[237],"at":[241],"https://github.com/jiaoshihu/PSPred-ALE":[242],"Zenodo":[244],"(https://doi.org/10.5281/zenodo.8330277).":[245]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2023-10-18T00:00:00"}
