{"id":"https://openalex.org/W4387439136","doi":"https://doi.org/10.1093/bioinformatics/btad618","title":"MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data","display_name":"MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data","publication_year":2023,"publication_date":"2023-10-01","ids":{"openalex":"https://openalex.org/W4387439136","doi":"https://doi.org/10.1093/bioinformatics/btad618","pmid":"https://pubmed.ncbi.nlm.nih.gov/37812234"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad618","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad618","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad618/51960029/btad618.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad618/51960029/btad618.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086646667","display_name":"Thomas Naake","orcid":"https://orcid.org/0000-0001-7917-5580"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thomas Naake","raw_affiliation_strings":["Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany","Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, 69117, Germany"],"affiliations":[{"raw_affiliation_string":"Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany","institution_ids":["https://openalex.org/I4210138560"]},{"raw_affiliation_string":"Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, 69117, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102735387","display_name":"Johannes Rainer","orcid":"https://orcid.org/0000-0002-6977-7147"},"institutions":[{"id":"https://openalex.org/I4210118299","display_name":"Institute for Biomedicine","ror":"https://ror.org/02hsggv49","country_code":"IT","type":"facility","lineage":["https://openalex.org/I1319360392","https://openalex.org/I4210118299"]},{"id":"https://openalex.org/I1319360392","display_name":"Eurac Research","ror":"https://ror.org/01xt1w755","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1319360392"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Johannes Rainer","raw_affiliation_strings":["Institute for Biomedicine (Affiliated to the University of L\u00fcbeck), Eurac Research , Bolzano 39100, Italy"],"affiliations":[{"raw_affiliation_string":"Institute for Biomedicine (Affiliated to the University of L\u00fcbeck), Eurac Research , Bolzano 39100, Italy","institution_ids":["https://openalex.org/I4210118299","https://openalex.org/I1319360392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029601108","display_name":"Wolfgang Huber","orcid":"https://orcid.org/0000-0002-0474-2218"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Huber","raw_affiliation_strings":["Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany","Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, 69117, Germany"],"affiliations":[{"raw_affiliation_string":"Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany","institution_ids":["https://openalex.org/I4210138560"]},{"raw_affiliation_string":"Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, 69117, Germany","institution_ids":["https://openalex.org/I4210138560"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086646667"],"corresponding_institution_ids":["https://openalex.org/I4210138560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4209,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81910724,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12073","display_name":"Isotope Analysis in Ecology","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.747288703918457},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.726188063621521},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6472207307815552},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5840494632720947},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5614033937454224},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5244758129119873},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4787689745426178},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4599866271018982},{"id":"https://openalex.org/keywords/data-source","display_name":"Data source","score":0.4365718364715576},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4277361035346985},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36032921075820923},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3555200695991516},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3524620532989502},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2224811315536499},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2114030122756958},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21102434396743774},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.13091108202934265}],"concepts":[{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.747288703918457},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.726188063621521},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6472207307815552},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5840494632720947},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5614033937454224},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5244758129119873},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4787689745426178},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4599866271018982},{"id":"https://openalex.org/C2983685735","wikidata":"https://www.wikidata.org/wiki/Q5227355","display_name":"Data source","level":2,"score":0.4365718364715576},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4277361035346985},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36032921075820923},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3555200695991516},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3524620532989502},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2224811315536499},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2114030122756958},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21102434396743774},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.13091108202934265},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad618","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad618","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad618/51960029/btad618.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37812234","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37812234","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10580266","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10580266","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10580266/pdf/btad618.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:unibz.it:11310178530001241","is_oa":true,"landing_page_url":"https://bia.unibz.it/esploro/outputs/journalArticle/MsQuality-an-interoperable-open-source-package-for/991006672197801241","pdf_url":"https://bia.unibz.it/view/delivery/39UBZ_INST/12310178520001241/13310138270001241","source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad618","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad618","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad618/51960029/btad618.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7954067340","display_name":null,"funder_award_id":"161L0212E","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387439136.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1975906241","https://openalex.org/W1982653600","https://openalex.org/W2010374268","https://openalex.org/W2053655123","https://openalex.org/W2077240010","https://openalex.org/W2163917093","https://openalex.org/W2211150216","https://openalex.org/W2515225781","https://openalex.org/W3138737153","https://openalex.org/W4213068307","https://openalex.org/W4308137585"],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W1493891899","https://openalex.org/W4250928611","https://openalex.org/W166480398","https://openalex.org/W1612808768","https://openalex.org/W167327709","https://openalex.org/W1977393088","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W2288962794"],"abstract_inverted_index":{"The":[0],"R":[1],"package":[2],"MsQuality":[3],"is":[4],"available":[5],"through":[6],"Bioconductor":[7],"at":[8],"https://bioconductor.org/packages/MsQuality.":[9]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
