{"id":"https://openalex.org/W4387420339","doi":"https://doi.org/10.1093/bioinformatics/btad610","title":"Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data","display_name":"Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data","publication_year":2023,"publication_date":"2023-10-01","ids":{"openalex":"https://openalex.org/W4387420339","doi":"https://doi.org/10.1093/bioinformatics/btad610","pmid":"https://pubmed.ncbi.nlm.nih.gov/37802917"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad610","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad610","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad610/51925350/btad610.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad610/51925350/btad610.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009249253","display_name":"Ping\u2010Han Hsieh","orcid":"https://orcid.org/0000-0003-3054-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Ping-Han Hsieh","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , Oslo 0318, Norway","Department of Informatics, University of Oslo , Oslo 0316, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , Oslo 0318, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo , Oslo 0316, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024467494","display_name":"Camila M. Lopes\u2010Ramos","orcid":"https://orcid.org/0000-0003-0284-7371"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Camila Miranda Lopes-Ramos","raw_affiliation_strings":["Channing Division of Network Medicine, Brigham and Women's Hospital , Boston, MA 02115, United States","Department of Biostatistics, Harvard T.H. Chan School of Public Health , Boston, MA 02115, United States","Department of Medicine, Harvard Medical School, Boston, MA 02115 , USA"],"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Brigham and Women's Hospital , Boston, MA 02115, United States","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Department of Biostatistics, Harvard T.H. Chan School of Public Health , Boston, MA 02115, United States","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Medicine, Harvard Medical School, Boston, MA 02115 , USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077473496","display_name":"Manuela Zucknick","orcid":"https://orcid.org/0000-0003-1317-7422"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Manuela Zucknick","raw_affiliation_strings":["Oslo Centre for Biostatistics and Epidemiology, Institute of Basic Medical Sciences, University of Oslo , Oslo 0317, Norway"],"affiliations":[{"raw_affiliation_string":"Oslo Centre for Biostatistics and Epidemiology, Institute of Basic Medical Sciences, University of Oslo , Oslo 0317, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Geir Kjetil Sandve","raw_affiliation_strings":["Department of Informatics, University of Oslo , Oslo 0316, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo , Oslo 0316, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075746488","display_name":"Kimberly Glass","orcid":"https://orcid.org/0000-0003-4394-5779"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kimberly Glass","raw_affiliation_strings":["Channing Division of Network Medicine, Brigham and Women's Hospital , Boston, MA 02115, United States","Department of Biostatistics, Harvard T.H. Chan School of Public Health , Boston, MA 02115, United States"],"affiliations":[{"raw_affiliation_string":"Channing Division of Network Medicine, Brigham and Women's Hospital , Boston, MA 02115, United States","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Department of Biostatistics, Harvard T.H. Chan School of Public Health , Boston, MA 02115, United States","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081799863","display_name":"Marieke L. Kuijjer","orcid":"https://orcid.org/0000-0001-6280-3130"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL","NO"],"is_corresponding":false,"raw_author_name":"Marieke Lydia Kuijjer","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , Oslo 0318, Norway","Department of Pathology, Leiden University Medical Center , Leiden 2300RC, The Netherlands","Leiden Center of Computational Oncology, Leiden University Medical Center ,Leiden 2300RC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , Oslo 0318, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Pathology, Leiden University Medical Center , Leiden 2300RC, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]},{"raw_affiliation_string":"Leiden Center of Computational Oncology, Leiden University Medical Center ,Leiden 2300RC, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5009249253"],"corresponding_institution_ids":["https://openalex.org/I184942183"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3703,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81400079,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"39","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8567843437194824},{"id":"https://openalex.org/keywords/quantile","display_name":"Quantile","score":0.7489285469055176},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.595327615737915},{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.5238085985183716},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5181997418403625},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5083579421043396},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5008604526519775},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46985331177711487},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4418964385986328},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.420939177274704},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.39285534620285034},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31133031845092773},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.24106988310813904},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2204970121383667},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20716851949691772},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17791545391082764},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1664225459098816}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8567843437194824},{"id":"https://openalex.org/C118671147","wikidata":"https://www.wikidata.org/wiki/Q578714","display_name":"Quantile","level":2,"score":0.7489285469055176},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.595327615737915},{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.5238085985183716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5181997418403625},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5083579421043396},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5008604526519775},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46985331177711487},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4418964385986328},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.420939177274704},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.39285534620285034},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31133031845092773},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.24106988310813904},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2204970121383667},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20716851949691772},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17791545391082764},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1664225459098816},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad610","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad610","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad610/51925350/btad610.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37802917","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37802917","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10598588","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10598588","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10598588/pdf/btad610.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3768794","is_oa":true,"landing_page_url":"https://hdl.handle.net/1887/3768794","pdf_url":"https://scholarlypublications.universiteitleiden.nl/access/item%3A3768795/view","source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:www.duo.uio.no:10852/109231","is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/109231","pdf_url":null,"source":{"id":"https://openalex.org/S4306401717","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad610","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad610","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad610/51925350/btad610.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G10312305","display_name":null,"funder_award_id":"R35 CA220523","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G1321665676","display_name":null,"funder_award_id":"HL007","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2509796369","display_name":null,"funder_award_id":"T32HL007427","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3297604876","display_name":null,"funder_award_id":"R01HL15574","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3298056745","display_name":null,"funder_award_id":"R01HL","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3748656914","display_name":null,"funder_award_id":"Norway","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G3912267478","display_name":null,"funder_award_id":"R01HL155","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4135955779","display_name":null,"funder_award_id":"214871","funder_id":"https://openalex.org/F4320310758","funder_display_name":"Kreftforeningen"},{"id":"https://openalex.org/G44091114","display_name":null,"funder_award_id":"313932","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G4730798529","display_name":null,"funder_award_id":"HL007427","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5105309961","display_name":null,"funder_award_id":"R35 CA220523","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5289656247","display_name":null,"funder_award_id":"HL007427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6603750966","display_name":null,"funder_award_id":"T32HL007427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6819513661","display_name":null,"funder_award_id":"R01HL155749","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6919290578","display_name":null,"funder_award_id":"HL155749","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6970925884","display_name":null,"funder_award_id":"187615","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G77232416","display_name":null,"funder_award_id":"R01HG011393","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8026655011","display_name":null,"funder_award_id":"187615","funder_id":"https://openalex.org/F4320323260","funder_display_name":"Universitetet i Oslo"},{"id":"https://openalex.org/G8427194336","display_name":null,"funder_award_id":"R01HG011393","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8516560217","display_name":null,"funder_award_id":"R01HL155749","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320310758","display_name":"Kreftforeningen","ror":"https://ror.org/01925vb10"},{"id":"https://openalex.org/F4320323260","display_name":"Universitetet i Oslo","ror":"https://ror.org/01xtthb56"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387420339.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1533942137","https://openalex.org/W1966327575","https://openalex.org/W2020672230","https://openalex.org/W2030035054","https://openalex.org/W2039176012","https://openalex.org/W2045949302","https://openalex.org/W2066534054","https://openalex.org/W2070757897","https://openalex.org/W2076513103","https://openalex.org/W2106555403","https://openalex.org/W2107018762","https://openalex.org/W2110256992","https://openalex.org/W2115664087","https://openalex.org/W2121695897","https://openalex.org/W2135573014","https://openalex.org/W2136765349","https://openalex.org/W2146512944","https://openalex.org/W2152239989","https://openalex.org/W2158485828","https://openalex.org/W2342019990","https://openalex.org/W2512302398","https://openalex.org/W2606715885","https://openalex.org/W2626606138","https://openalex.org/W2900569176","https://openalex.org/W2949475756","https://openalex.org/W2950211350","https://openalex.org/W2950338203","https://openalex.org/W2950814754","https://openalex.org/W2950967976","https://openalex.org/W2951538786","https://openalex.org/W2951920373","https://openalex.org/W2964234453","https://openalex.org/W2964312306","https://openalex.org/W2981418780","https://openalex.org/W2989793717","https://openalex.org/W3017356540","https://openalex.org/W3036440993","https://openalex.org/W3037120109","https://openalex.org/W3082975070","https://openalex.org/W3122109253","https://openalex.org/W3154671194","https://openalex.org/W3197833284","https://openalex.org/W4210644165","https://openalex.org/W6682331158"],"related_works":["https://openalex.org/W3113091479","https://openalex.org/W941090075","https://openalex.org/W2162899405","https://openalex.org/W2044987316","https://openalex.org/W2237480245","https://openalex.org/W3134374554","https://openalex.org/W2519167559","https://openalex.org/W2075065631","https://openalex.org/W4288358396","https://openalex.org/W4311248832"],"abstract_inverted_index":{"The":[0],"implementation":[1],"of":[2],"the":[3,10,20],"SNAIL":[4],"algorithm":[5],"and":[6],"code":[7],"to":[8],"reproduce":[9],"analyses":[11],"described":[12],"in":[13,19],"this":[14],"work":[15],"can":[16],"be":[17],"found":[18],"GitHub":[21],"repository":[22],"https://github.com/kuijjerlab/PySNAIL.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
