{"id":"https://openalex.org/W4387332205","doi":"https://doi.org/10.1093/bioinformatics/btad609","title":"<i>UDock2</i>: interactive real-time multi-body protein\u2013protein docking software","display_name":"<i>UDock2</i>: interactive real-time multi-body protein\u2013protein docking software","publication_year":2023,"publication_date":"2023-10-01","ids":{"openalex":"https://openalex.org/W4387332205","doi":"https://doi.org/10.1093/bioinformatics/btad609","pmid":"https://pubmed.ncbi.nlm.nih.gov/37792496"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad609","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad609","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad609/51854691/btad609.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad609/51854691/btad609.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093000346","display_name":"Cyprien Plateau\u2013Holleville","orcid":"https://orcid.org/0000-0003-1510-557X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Cyprien Plateau-Holleville","raw_affiliation_strings":["XLIM, UMR CNRS 7252, University of Limoges , 87000 Limoges, France"],"raw_orcid":"https://orcid.org/0000-0003-1510-557X","affiliations":[{"raw_affiliation_string":"XLIM, UMR CNRS 7252, University of Limoges , 87000 Limoges, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I65806277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003019788","display_name":"Simon Guionni\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon Guionni\u00e8re","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016876250","display_name":"Benjamin Boyer","orcid":"https://orcid.org/0000-0003-2414-8731"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benjamin Boyer","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012374366","display_name":"Brian Jim\u00e9nez\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0001-7786-2109"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brian Jim\u00e9nez-Garcia","raw_affiliation_strings":["Zymvol Biomodeling , 08010 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zymvol Biomodeling , 08010 Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025068400","display_name":"Guillaume Levieux","orcid":"https://orcid.org/0000-0001-8844-4447"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I4210134562","display_name":"HESAM Universit\u00e9","ror":"https://ror.org/042949r55","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I4210145724","display_name":"Centre d'\u00e9tudes et de recherche en informatique et communications","ror":"https://ror.org/044j5mm75","country_code":"FR","type":"facility","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562","https://openalex.org/I4210145724"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Levieux","raw_affiliation_strings":["CEDRIC, EA 4626, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEDRIC, EA 4626, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France","institution_ids":["https://openalex.org/I124158823","https://openalex.org/I4210134562","https://openalex.org/I4210145724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007377103","display_name":"St\u00e9phane M\u00e9rillou","orcid":"https://orcid.org/0000-0003-2820-8076"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane M\u00e9rillou","raw_affiliation_strings":["XLIM, UMR CNRS 7252, University of Limoges , 87000 Limoges, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"XLIM, UMR CNRS 7252, University of Limoges , 87000 Limoges, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I65806277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044650604","display_name":"Maxime Maria","orcid":"https://orcid.org/0009-0004-5723-1827"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maxime Maria","raw_affiliation_strings":["XLIM, UMR CNRS 7252, University of Limoges , 87000 Limoges, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"XLIM, UMR CNRS 7252, University of Limoges , 87000 Limoges, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I65806277"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087675495","display_name":"Matthieu Mont\u00e8s","orcid":"https://orcid.org/0000-0001-5921-460X"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Matthieu Montes","raw_affiliation_strings":["Institut Universitaire de France (IUF) , Paris 75005, France","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-5921-460X","affiliations":[{"raw_affiliation_string":"Institut Universitaire de France (IUF) , Paris 75005, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, H\u00e9sam Universit\u00e9 , 75003 Paris, France","institution_ids":["https://openalex.org/I124158823"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5087675495","https://openalex.org/A5093000346"],"corresponding_institution_ids":["https://openalex.org/I124158823","https://openalex.org/I1294671590","https://openalex.org/I185839726","https://openalex.org/I65806277"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3420,"currency":"EUR","value_usd":3688},"fwci":0.8437,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.70518912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.4544999897480011,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.4544999897480011,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.06469999998807907,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.061000000685453415,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8044478893280029},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.7402706742286682},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6541873812675476},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6331158876419067},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6278277635574341},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6209949254989624},{"id":"https://openalex.org/keywords/on-the-fly","display_name":"On the fly","score":0.5509554147720337},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4637286067008972},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.45631349086761475},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.45201027393341064},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.38924291729927063},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.2520284652709961},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23618406057357788},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2184789776802063},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1797286868095398},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1685413122177124}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8044478893280029},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.7402706742286682},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6541873812675476},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6331158876419067},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6278277635574341},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6209949254989624},{"id":"https://openalex.org/C2781020372","wikidata":"https://www.wikidata.org/wiki/Q533093","display_name":"On the fly","level":2,"score":0.5509554147720337},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4637286067008972},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.45631349086761475},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.45201027393341064},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.38924291729927063},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2520284652709961},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23618406057357788},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2184789776802063},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1797286868095398},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1685413122177124},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad609","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad609","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad609/51854691/btad609.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37792496","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37792496","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-04356674v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04356674","pdf_url":"https://hal.science/hal-04356674/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/bioinformatics/article/39/10/btad609/7288885","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10938049","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10938049","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10938049/pdf/btad609.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad609","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad609","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad609/51854691/btad609.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6242501798","display_name":"Transverse Actions between advanced Ceramics & TIC","funder_award_id":"ANR-18-EURE-0017","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387332205.pdf"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1963745691","https://openalex.org/W1975153518","https://openalex.org/W1976072205","https://openalex.org/W1978082383","https://openalex.org/W2137167381","https://openalex.org/W2138865250","https://openalex.org/W2152320247","https://openalex.org/W2152630148","https://openalex.org/W2155796229","https://openalex.org/W2177731497","https://openalex.org/W2612725110","https://openalex.org/W2769162782","https://openalex.org/W2936106934","https://openalex.org/W3011300995","https://openalex.org/W3116310237"],"related_works":["https://openalex.org/W2982321410","https://openalex.org/W2392004567","https://openalex.org/W2046296964","https://openalex.org/W2940029036","https://openalex.org/W4388292429","https://openalex.org/W2756595502","https://openalex.org/W2010789764","https://openalex.org/W2187233292","https://openalex.org/W4389422031","https://openalex.org/W2219281195"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein-protein":[1],"docking":[2,48,84],"aims":[3],"at":[4,122,129],"predicting":[5],"the":[6,15,71,74,97],"geometry":[7],"of":[8,61,77],"protein":[9,78,105],"interactions":[10],"to":[11,37,65,95,100],"gain":[12],"insights":[13],"into":[14,104],"mechanisms":[16],"underlying":[17],"these":[18],"processes":[19],"and":[20,28,59,99,108,118,120],"develop":[21],"new":[22],"strategies":[23],"for":[24,52,57],"drug":[25],"discovery.":[26],"Interactive":[27],"user-oriented":[29],"manipulation":[30],"tools":[31],"can":[32,126],"support":[33],"this":[34],"task":[35],"complementary":[36],"automated":[38],"software.":[39],"RESULTS:":[40],"This":[41],"article":[42],"presents":[43],"an":[44,81],"interactive":[45],"multi-body":[46],"protein-protein":[47],"software,":[49],"UDock2,":[50,70],"designed":[51],"research":[53],"but":[54],"also":[55],"usable":[56],"teaching":[58],"popularization":[60],"science":[62],"purposes":[63],"due":[64],"its":[66],"high":[67],"usability.":[68],"In":[69],"users":[72],"tackle":[73],"conformational":[75],"space":[76],"interfaces":[79],"using":[80],"intuitive":[82],"real-time":[83],"procedure":[85],"with":[86],"on-the-fly":[87],"scoring.":[88],"UDock2":[89,113],"integrates":[90],"traditional":[91],"computer":[92],"graphics":[93],"methods":[94],"facilitate":[96],"visualization":[98],"provide":[101],"better":[102],"insight":[103],"surfaces,":[106],"interfaces,":[107],"properties.":[109],"AVAILABILITY":[110],"AND":[111],"IMPLEMENTATION:":[112],"is":[114],"open-source,":[115],"cross-platform":[116],"(Windows":[117],"Linux),":[119],"available":[121],"http://udock.fr.":[123],"The":[124],"code":[125],"be":[127],"accessed":[128],"https://gitlab.com/Udock/Udock2.":[130]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2023-10-05T00:00:00"}
